Literature DB >> 11842218

Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution.

Samir Kumar Pal1, Jorge Peon, Ahmed H Zewail.   

Abstract

Biological water at the interface of proteins is critical to their equilibrium structures and enzyme function and to phenomena such as molecular recognition and protein-protein interactions. To actually probe the dynamics of water structure at the surface, we must examine the protein itself, without disrupting the native structure, and the ultrafast elementary processes of hydration. Here we report direct study, with femtosecond resolution, of the dynamics of hydration at the surface of the enzyme protein Subtilisin Carlsberg, whose single Trp residue (Trp-113) was used as an intrinsic biological fluorescent probe. For the protein, we observed two well separated dynamical solvation times, 0.8 ps and 38 ps, whereas in bulk water, we obtained 180 fs and 1.1 ps. We also studied a covalently bonded probe at a separation of approximately 7 A and observed the near disappearance of the 38-ps component, with solvation being practically complete in (time constant) 1.5 ps. The degree of rigidity of the probe (anisotropy decay) and of the water environment (protein vs. micelle) was also studied. These results show that hydration at the surface is a dynamical process with two general types of trajectories, those that result from weak interactions with the selected surface site, giving rise to bulk-type solvation (approximately 1 ps), and those that have a stronger interaction, enough to define a rigid water structure, with a solvation time of 38 ps, much slower than that of the bulk. At a distance of approximately 7 A from the surface, essentially all trajectories are bulk-type. The theoretical framework for these observations is discussed.

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Year:  2002        PMID: 11842218      PMCID: PMC122267          DOI: 10.1073/pnas.042697899

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

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Journal:  Proteins       Date:  1995-05

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Journal:  Proteins       Date:  1994-02

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Authors:  D Zhong; S K Pal; A H Zewail
Journal:  Chemphyschem       Date:  2001-04-17       Impact factor: 3.102

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  86 in total

1.  Modeling the hydration of proteins: prediction of structural and hydrodynamic parameters from X-ray diffraction and scattering data.

Authors:  Helmut Durchschlag; Peter Zipper
Journal:  Eur Biophys J       Date:  2003-04-25       Impact factor: 1.733

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Authors:  Ali Rana Atilgan; Pelin Akan; Canan Baysal
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3.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

4.  The RNA-protein complex: direct probing of the interfacial recognition dynamics and its correlation with biological functions.

Authors:  Tianbing Xia; Hans-Christian Becker; Chaozhi Wan; Adam Frankel; Richard W Roberts; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-18       Impact factor: 11.205

5.  Relaxation kinetics and the glassiness of proteins: the case of bovine pancreatic trypsin inhibitor.

Authors:  Canan Baysal; Ali Rana Atilgan
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

Review 6.  Protein hydration dynamics in solution: a critical survey.

Authors:  Bertil Halle
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

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Authors:  Michael Petukhov; Georgy Rychkov; Leonid Firsov; Luis Serrano
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

8.  Ultrafast hydration dynamics in protein unfolding: human serum albumin.

Authors:  J K Amisha Kamal; Liang Zhao; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-07       Impact factor: 11.205

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Authors:  Alexander Rubinstein; Simon Sherman
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

10.  Water and proteins: a love-hate relationship.

Authors:  Yaakov Levy; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-01       Impact factor: 11.205

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