Literature DB >> 14695286

Competition with xenon elicits ligand migration and escape pathways in myoglobin.

Catherine Tetreau1, Yves Blouquit, Eugene Novikov, Eric Quiniou, Daniel Lavalette.   

Abstract

Evidence for ligand migration toward the xenon-binding cavities in myoglobin comes from a number of laser photolysis studies of MbO2 including mutants and from cryo- and time-resolved crystallography of MbCO. To explore ligand migration in greater detail, we investigated the rebinding kinetics of both MbO2 and MbCO under a xenon partial pressure ranging from 1 to 16 atm over the temperature range (293-77 K). Below 180 K xenon affects to a significant, but minor, extent the thermodynamic parameters for rebinding from the primary docking site in each Mb taxonomic substate. Above 200 K the ligand migrates to the proximal Xe1 site but when the latter is occupied by xenon a new kinetic process appears. It is attributed to rebinding from transient docking sites located on the path between the primary and the secondary docking site of both ligands. Ligand escape exhibits a more complicated pattern than expected. At room temperature O2 and CO escape appears to take place exclusively from the primary site. In contrast, at T approximately 250 K, roughly 50% of the CO molecules that have escaped from the protein originate from the Xe1 secondary site.

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Year:  2004        PMID: 14695286      PMCID: PMC1303809          DOI: 10.1016/S0006-3495(04)74120-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

1.  Ligand migration in human myoglobin: steric effects of isoleucine 107(G8) on O(2) and CO binding.

Authors:  H Ishikawa; T Uchida; S Takahashi; K Ishimori; I Morishima
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

Review 2.  Structural dynamics of myoglobin.

Authors:  M Brunori
Journal:  Biophys Chem       Date:  2000-08-30       Impact factor: 2.352

3.  X-ray structure determination of a metastable state of carbonmonoxy myoglobin after photodissociation.

Authors:  H Hartmann; S Zinser; P Komninos; R T Schneider; G U Nienhaus; F Parak
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

4.  Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin.

Authors:  K Chu; J Vojtchovský; B H McMahon; R M Sweet; J Berendzen; I Schlichting
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

5.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Distal cavity fluctuations in myoglobin: protein motion and ligand diffusion.

Authors:  M L Carlson; R M Regan; Q H Gibson
Journal:  Biochemistry       Date:  1996-01-30       Impact factor: 3.162

7.  Mapping the pathways for O2 entry into and exit from myoglobin.

Authors:  E E Scott; Q H Gibson; J S Olson
Journal:  J Biol Chem       Date:  2000-10-03       Impact factor: 5.157

8.  Conformational relaxation in hemoproteins: the cytochrome P-450cam case.

Authors:  C Tetreau; M Tourbez; D Lavalette
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

9.  Distal pocket residues affect picosecond ligand recombination in myoglobin. An experimental and molecular dynamics study of position 29 mutants.

Authors:  Q H Gibson; R Regan; R Elber; J S Olson; T E Carver
Journal:  J Biol Chem       Date:  1992-11-05       Impact factor: 5.157

10.  Photolysis-induced structural changes in single crystals of carbonmonoxy myoglobin at 40 K.

Authors:  T Y Teng; V Srajer; K Moffat
Journal:  Nat Struct Biol       Date:  1994-10
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  25 in total

1.  Different relaxations in myoglobin after photolysis.

Authors:  Matteo Levantino; Antonio Cupane; László Zimányi; Pál Ormos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

2.  Coupling of protein relaxation to ligand binding and migration in myoglobin.

Authors:  Noam Agmon
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

3.  Blocking the gate to ligand entry in human hemoglobin.

Authors:  Ivan Birukou; Jayashree Soman; John S Olson
Journal:  J Biol Chem       Date:  2010-12-29       Impact factor: 5.157

4.  Dynamic features of carboxy cytoglobin distal mutants investigated by molecular dynamics simulations.

Authors:  Cong Zhao; Weihong Du
Journal:  J Biol Inorg Chem       Date:  2016-02-03       Impact factor: 3.358

5.  Disentangling ligand migration and heme pocket relaxation in cytochrome P450cam.

Authors:  Catherine Tetreau; Liliane Mouawad; Samuel Murail; Patricia Duchambon; Yves Blouquit; Daniel Lavalette
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

6.  Temperature-dependent studies of NO recombination to heme and heme proteins.

Authors:  Dan Ionascu; Flaviu Gruia; Xiong Ye; Anchi Yu; Florin Rosca; Chris Beck; Andrey Demidov; John S Olson; Paul M Champion
Journal:  J Am Chem Soc       Date:  2005-12-07       Impact factor: 15.419

7.  CO migration pathways in cytochrome P450cam studied by molecular dynamics simulations.

Authors:  Liliane Mouawad; Catherine Tetreau; Safwat Abdel-Azeim; David Perahia; Daniel Lavalette
Journal:  Protein Sci       Date:  2007-03-30       Impact factor: 6.725

8.  Full kinetics of CO entry, internal diffusion, and exit in myoglobin from transition-path theory simulations.

Authors:  Tang-Qing Yu; Mauro Lapelosa; Eric Vanden-Eijnden; Cameron F Abrams
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

9.  Water and ligand entry in myoglobin: assessing the speed and extent of heme pocket hydration after CO photodissociation.

Authors:  Robert A Goldbeck; Shyam Bhaskaran; Cheri Ortega; Juan L Mendoza; John S Olson; Jayashree Soman; David S Kliger; Raymond M Esquerra
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

10.  Docking and migration of carbon monoxide in nitrogenase: the case for gated pockets from infrared spectroscopy and molecular dynamics.

Authors:  Leland B Gee; Igor Leontyev; Alexei Stuchebrukhov; Aubrey D Scott; Vladimir Pelmenschikov; Stephen P Cramer
Journal:  Biochemistry       Date:  2015-05-15       Impact factor: 3.162

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