Literature DB >> 12805566

Fast gating in the Shaker K+ channel and the energy landscape of activation.

Daniel Sigg1, Francisco Bezanilla, Enrico Stefani.   

Abstract

An early component of the gating current in Shaker K+ channels with a time constant of approximately 12 microsec has been recorded with a high-speed patch-clamp setup. This fast component was found to be part of the gating current associated with the opening and closing of the channel. With regard to an energy-landscape interpretation of protein kinetics, the voltage and temperature dependence of the fast component may be explained by a combination of drift diffusion and barrier jumping in the initial stages of channel activation. The data were modeled by a gating particle undergoing Brownian motion in a one-dimensional diffusion landscape that featured diminishing electrical resistance and entropy in the direction of channel activation. The final open state of the channel was reasoned to be narrow and deep to account for successful subtraction of linear-charge displacements at positive potentials. The overall picture of gating that emerges from these studies is that the channel experiences incremental organization from a relaxed state in the early steps of activation to a rigidly structured open state.

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Year:  2003        PMID: 12805566      PMCID: PMC164634          DOI: 10.1073/pnas.1332409100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

Review 1.  The voltage sensor in voltage-dependent ion channels.

Authors:  F Bezanilla
Journal:  Physiol Rev       Date:  2000-04       Impact factor: 37.312

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Authors:  T W Allen; S H Chung
Journal:  Biochim Biophys Acta       Date:  2001-12-01

3.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

4.  X-ray structure of a voltage-dependent K+ channel.

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Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

5.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

6.  Kramers' diffusion theory applied to gating kinetics of voltage-dependent ion channels.

Authors:  D Sigg; H Qian; F Bezanilla
Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

7.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity.

Authors:  D A Doyle; J Morais Cabral; R A Pfuetzner; A Kuo; J M Gulbis; S L Cohen; B T Chait; R MacKinnon
Journal:  Science       Date:  1998-04-03       Impact factor: 47.728

8.  Gating currents from a nonconducting mutant reveal open-closed conformations in Shaker K+ channels.

Authors:  E Perozo; R MacKinnon; F Bezanilla; E Stefani
Journal:  Neuron       Date:  1993-08       Impact factor: 17.173

9.  Gating of Shaker K+ channels: I. Ionic and gating currents.

Authors:  E Stefani; L Toro; E Perozo; F Bezanilla
Journal:  Biophys J       Date:  1994-04       Impact factor: 4.033

10.  Voltage gating of Shaker K+ channels. The effect of temperature on ionic and gating currents.

Authors:  B M Rodríguez; D Sigg; F Bezanilla
Journal:  J Gen Physiol       Date:  1998-08       Impact factor: 4.086

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  38 in total

1.  Coupled motions between pore and voltage-sensor domains: a model for Shaker B, a voltage-gated potassium channel.

Authors:  Werner Treptow; Bernard Maigret; Christophe Chipot; Mounir Tarek
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

2.  Realistic simulation of the activation of voltage-gated ion channels.

Authors:  Anatoly Dryga; Suman Chakrabarty; Spyridon Vicatos; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

3.  Microscopic origin of gating current fluctuations in a potassium channel voltage sensor.

Authors:  J Alfredo Freites; Eric V Schow; Stephen H White; Douglas J Tobias
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

4.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

5.  Computational modeling of neurons: intensity-duration relationship of extracellular electrical stimulation for changes in intracellular calcium.

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Journal:  J Neurophysiol       Date:  2015-10-28       Impact factor: 2.714

6.  Are rate constants constant?

Authors:  Stephen W Jones
Journal:  J Physiol       Date:  2006-02-02       Impact factor: 5.182

7.  End-point targeted molecular dynamics: large-scale conformational changes in potassium channels.

Authors:  R J Mashl; E Jakobsson
Journal:  Biophys J       Date:  2008-02-29       Impact factor: 4.033

Review 8.  The last few frames of the voltage-gating movie.

Authors:  Fred J Sigworth
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

9.  Initial response of the potassium channel voltage sensor to a transmembrane potential.

Authors:  Werner Treptow; Mounir Tarek; Michael L Klein
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

10.  A linkage analysis toolkit for studying allosteric networks in ion channels.

Authors:  Daniel Sigg
Journal:  J Gen Physiol       Date:  2012-12-17       Impact factor: 4.086

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