Literature DB >> 15082830

Freezing immunoglobulins to see them move.

L Bongini1, D Fanelli, F Piazza, P De Los Rios, S Sandin, U Skoglund.   

Abstract

The issue of protein dynamics and its implications in the biological function of proteins are arousing greater and greater interest in different fields of molecular biology. In cryo-electron tomography experiments one may take several snapshots of a given biological macromolecule. In principle, a large enough collection of snapshots of the molecule may then be used to calculate its equilibrium configuration in terms of the experimentally accessible degrees of freedom and, hence, to estimate its potential energy. This information would be crucial in order to analyze the biological functions of biomolecules by directly accessing the relevant dynamical indicators. In this article, we analyze the results of cryo-electron tomography experiments performed on monoclonal murine IgG2a antibodies. We measure the equilibrium distribution of the molecule in terms of the relevant angular coordinates and build a mechanical model of the antibody dynamics. This approach enables us to derive an explicit expression of the IgG potential energy. Furthermore, we discuss the configuration space at equilibrium in relation to results from other techniques, and we set our discussion in the context of the current debate regarding conformation and flexibility of antibodies.

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Year:  2004        PMID: 15082830      PMCID: PMC404068          DOI: 10.1073/pnas.0400119101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

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Journal:  Int Arch Allergy Immunol       Date:  1999-10       Impact factor: 2.749

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Authors:  E O Saphire; P W Parren; R Pantophlet; M B Zwick; G M Morris; P M Rudd; R A Dwek; R L Stanfield; D R Burton; I A Wilson
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

3.  Contrasting IgG structures reveal extreme asymmetry and flexibility.

Authors:  Erica Ollmann Saphire; Robyn L Stanfield; M D Max Crispin; Paul W H I Parren; Pauline M Rudd; Raymond A Dwek; Dennis R Burton; Ian A Wilson
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

4.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

5.  Structure and flexibility of individual immunoglobulin G molecules in solution.

Authors:  Sara Sandin; Lars-Göran Ofverstedt; Ann-Charlotte Wikström; Orjan Wrange; Ulf Skoglund
Journal:  Structure       Date:  2004-03       Impact factor: 5.006

6.  Crystallographic structure studies of an IgG molecule and an Fc fragment.

Authors:  R Huber; J Deisenhofer; P M Colman; M Matsushima; W Palm
Journal:  Nature       Date:  1976-12-02       Impact factor: 49.962

7.  Reconstruction of three dimensional structures from electron micrographs.

Authors:  D J De Rosier; A Klug
Journal:  Nature       Date:  1968-01-13       Impact factor: 49.962

8.  The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. II. Direct methods.

Authors:  P F Gilbert
Journal:  Proc R Soc Lond B Biol Sci       Date:  1972-07-25

9.  Reconstruction of three-dimensional images from electron micrographs of structures with helical symmetry.

Authors:  D J DeRosier; P B Moore
Journal:  J Mol Biol       Date:  1970-09-14       Impact factor: 5.469

10.  Three-dimensional reconstruction of individual negatively stained yeast fatty-acid synthetase molecules from tilt series in the electron microscope.

Authors:  W Hoppe; J Gassmann; N Hunsmann; H J Schramm; M Sturm
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1974-11
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  23 in total

1.  Structure and function of purified monoclonal antibody dimers induced by different stress conditions.

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Journal:  Pharm Res       Date:  2012-04-05       Impact factor: 4.200

2.  Construction, MD simulation, and hydrodynamic validation of an all-atom model of a monoclonal IgG antibody.

Authors:  J Paul Brandt; Thomas W Patapoff; Sergio R Aragon
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

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Journal:  J Virol       Date:  2010-08-11       Impact factor: 5.103

4.  Anti-cooperativity in diffusion-controlled reactions with pairs of anisotropic domains: a model for the antigen-antibody encounter.

Authors:  F Piazza; P De Los Rios; D Fanelli; L Bongini; U Skoglund
Journal:  Eur Biophys J       Date:  2005-04-01       Impact factor: 1.733

5.  Predicting Protein-Protein Interactions of Concentrated Antibody Solutions Using Dilute Solution Data and Coarse-Grained Molecular Models.

Authors:  Cesar Calero-Rubio; Ranendu Ghosh; Atul Saluja; Christopher J Roberts
Journal:  J Pharm Sci       Date:  2017-12-21       Impact factor: 3.534

Review 6.  T cell engaging bispecific antibody (T-BsAb): From technology to therapeutics.

Authors:  Z Wu; N V Cheung
Journal:  Pharmacol Ther       Date:  2017-08-20       Impact factor: 12.310

7.  2G12-expressing B cell lines may aid in HIV carbohydrate vaccine design strategies.

Authors:  Katie J Doores; Michael Huber; Khoa M Le; Sheng-Kai Wang; Colleen Doyle-Cooper; Anthony Cooper; Ralph Pantophlet; Chi-Huey Wong; David Nemazee; Dennis R Burton
Journal:  J Virol       Date:  2012-12-05       Impact factor: 5.103

8.  The antibody zalutumumab inhibits epidermal growth factor receptor signaling by limiting intra- and intermolecular flexibility.

Authors:  Jeroen J Lammerts van Bueren; Wim K Bleeker; Annika Brännström; Anne von Euler; Magnus Jansson; Matthias Peipp; Tanja Schneider-Merck; Thomas Valerius; Jan G J van de Winkel; Paul W H I Parren
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-21       Impact factor: 11.205

9.  Molecular height measurement by cell surface optical profilometry (CSOP).

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-08       Impact factor: 11.205

10.  Nephrin strands contribute to a porous slit diaphragm scaffold as revealed by electron tomography.

Authors:  Jorma Wartiovaara; Lars-Göran Ofverstedt; Jamshid Khoshnoodi; Jingjing Zhang; Eetu Mäkelä; Sara Sandin; Vesa Ruotsalainen; R Holland Cheng; Hannu Jalanko; Ulf Skoglund; Karl Tryggvason
Journal:  J Clin Invest       Date:  2004-11       Impact factor: 14.808

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