Literature DB >> 8369410

Structural relaxation and nonexponential kinetics of CO-binding to horse myoglobin. Multiple flash photolysis experiments.

F Post1, W Doster, G Karvounis, M Settles.   

Abstract

The geminate recombination kinetics of CO-myoglobin strongly deviates from single exponential behavior in contrast to what is expected for unimolecular reactions (1). At low temperatures, this result was attributed to slowly exchanging conformational states which differ substantially in barrier height for ligand binding. Above 160 K the kinetics apparently slow down with temperature increase. Agmon and Hopfield (2) explain this result in terms of structural relaxation perpendicular to the reaction coordinate, which enhances the activation energy. In their model, structural relaxation homogenizes the kinetic response. Recently, Steinbach et al. (3) proposed a relaxation model which conserves the kinetic inhomogeneity. Below we test these conjectures by single and multiple excitation experiments. This method allows for discrimination between parallel (inhomogeneous) and sequential (homogeneous) kinetic schemes. The kinetic anomaly above 160 K is shown to result from a homogeneous, structurally relaxed intermediate. However a second anomaly is found above 210 K concerning the inhomogeneous phase which may indicate either a shift in activation energy or entropy.

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Year:  1993        PMID: 8369410      PMCID: PMC1262517          DOI: 10.1016/S0006-3495(93)81554-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

1.  Determination of rate distributions from kinetic experiments.

Authors:  P J Steinbach; K Chu; H Frauenfelder; J B Johnson; D C Lamb; G U Nienhaus; T B Sauke; R D Young
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

2.  Relaxation dynamics of myoglobin in solution.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-01-20       Impact factor: 9.161

3.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

Review 4.  Conformational substates in proteins.

Authors:  H Frauenfelder; F Parak; R D Young
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

5.  Recombination of carbon monoxide to ferrous horseradish peroxidase types A and C.

Authors:  W Doster; S F Bowne; H Frauenfelder; L Reinisch; E Shyamsunder
Journal:  J Mol Biol       Date:  1987-03-20       Impact factor: 5.469

6.  Protein dynamics. Comparative investigation on heme-proteins with different physiological roles.

Authors:  E E Di Iorio; U R Hiltpold; D Filipovic; K H Winterhalter; E Gratton; E Vitrano; A Cupane; M Leone; L Cordone
Journal:  Biophys J       Date:  1991-03       Impact factor: 4.033

7.  Dynamics of ligand binding to myoglobin.

Authors:  R H Austin; K W Beeson; L Eisenstein; H Frauenfelder; I C Gunsalus
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

8.  CO bond angle changes in photolysis of carboxymyoglobin.

Authors:  L Powers; J L Sessler; G L Woolery; B Chance
Journal:  Biochemistry       Date:  1984-11-06       Impact factor: 3.162

9.  Rebinding and relaxation in the myoglobin pocket.

Authors:  A Ansari; J Berendzen; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; J B Johnson; P Ormos; T B Sauke
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

10.  Control and pH dependence of ligand binding to heme proteins.

Authors:  W Doster; D Beece; S F Bowne; E E DiIorio; L Eisenstein; H Frauenfelder; L Reinisch; E Shyamsunder; K H Winterhalter; K T Yue
Journal:  Biochemistry       Date:  1982-09-28       Impact factor: 3.162

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  13 in total

1.  Influence of static and dynamic disorder on the visible and infrared absorption spectra of carbonmonoxy horseradish peroxidase.

Authors:  A D Kaposi; J M Vanderkooi; W W Wright; J Fidy; S S Stavrov
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

3.  Coupling of protein relaxation to ligand binding and migration in myoglobin.

Authors:  Noam Agmon
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

4.  Downhill kinetics of biomolecular interface binding: globally connected scenario.

Authors:  Jin Wang; Weimin Huang; Hongyang Lu; Erkang Wang
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

5.  Ligand binding to heme proteins. V. Light-induced relaxation in proximal mutants L89I and H97F of carbonmonoxymyoglobin.

Authors:  Y Abadan; E Y Chien; K Chu; C D Eng; G U Nienhaus; S G Sligar
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

6.  Time course of reactions controlled and gated by intramolecular dynamics of proteins: predictions of the model of random walk on fractal lattices.

Authors:  M Kurzynski; K Palacz; P Chelminiak
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

7.  Dynamic properties of monomeric insect erythrocruorin III from Chironomus thummi-thummi: relationships between structural flexibility and functional complexity.

Authors:  E E Di Iorio; I Tavernelli; W Yu
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

8.  Molecular dynamics simulation of carboxy-myoglobin embedded in a trehalose-water matrix.

Authors:  G Cottone; L Cordone; G Ciccotti
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

9.  Iron-histidine resonance Raman band of deoxyheme proteins: effects of anharmonic coupling and glass-liquid phase transition.

Authors:  A Bitler; S S Stavrov
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

10.  Heme-solvent coupling: a Mössbauer study of myoglobin in sucrose.

Authors:  H Lichtenegger; W Doster; T Kleinert; A Birk; B Sepiol; G Vogl
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

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