Literature DB >> 12023218

Iron normal mode dynamics in (nitrosyl)iron(II)tetraphenylporphyrin from X-ray nuclear resonance data.

Brajesh K Rai1, Stephen M Durbin, Earl W Prohofsky, J Timothy Sage, Graeme R A Wyllie, W Robert Scheidt, Wolfgang Sturhahn, E Ercan Alp.   

Abstract

The complete iron atom vibrational spectrum has been obtained by refinement of normal mode calculations to nuclear inelastic x-ray absorption data from (nitrosyl)iron(II)tetraphenylporphyrin, FeTPP(NO), a useful model for heme dynamics in myoglobin and other heme proteins. Nuclear resonance vibrational spectroscopy (NRVS) provides a direct measurement of the frequency and iron amplitude for all normal modes involving significant displacement of (57)Fe. The NRVS measurements on isotopically enriched single crystals permit determination of heme in-plane and out-of-plane modes. Excellent agreement between the calculated and experimental values of frequency and iron amplitude for each mode is achieved by a force-field refinement. Significantly, we find that the presence of the phenyl groups and the NO ligand leads to substantial mixing of the porphyrin core modes. This first picture of the entire iron vibrational density of states for a porphyrin compound provides an improved model for the role of iron atom dynamics in the biological functioning of heme proteins.

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Year:  2002        PMID: 12023218      PMCID: PMC1302083          DOI: 10.1016/S0006-3495(02)75636-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  10 in total

1.  Nuclear forward scattering of synchrotron radiation by deoxymyoglobin.

Authors:  C Keppler; K Achterhold; A Ostermann; U van Bürck; A I Chumakov; R Rüffer; W Sturhahn; E E Alp; F G Parak
Journal:  Eur Biophys J       Date:  2000       Impact factor: 1.733

2.  Long-range reactive dynamics in myoglobin.

Authors:  J T Sage; S M Durbin; W Sturhahn; D C Wharton; P M Champion; P Hession; J Sutter; E E Alp
Journal:  Phys Rev Lett       Date:  2001-05-21       Impact factor: 9.161

Review 3.  Vibrational characteristics of tetrapyrrolic macrocycles.

Authors:  A D Procyk; D F Bocian
Journal:  Annu Rev Phys Chem       Date:  1992       Impact factor: 12.703

4.  Phonon density of states measured by inelastic nuclear resonant scattering.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-05-08       Impact factor: 9.161

5.  Real time observation of low frequency heme protein vibrations using femtosecond coherence spectroscopy.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-01-10       Impact factor: 9.161

6.  Observation of nuclear resonant scattering accompanied by phonon excitation using synchrotron radiation.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-05-08       Impact factor: 9.161

7.  Nitrosylmetalloporphyrins. II. Synthesis and molecular stereochemistry of mitrosyl-alpha, beta, gamma, delta,-tetraphenylporphinatoiron (ii)

Authors:  W R Scheidt; M E Frisse
Journal:  J Am Chem Soc       Date:  1975-01-08       Impact factor: 15.419

8.  Determination of the phonon spectrum of iron in myoglobin using inelastic X-ray scattering of synchrotron radiation.

Authors:  C Keppler; K Achterhold; A Ostermann; U van Bürck; W Potzel; A I Chumakov; A Q Baron; R Rüffer; F Parak
Journal:  Eur Biophys J       Date:  1997       Impact factor: 1.733

9.  Stereochemical trigger for initiating cooperative interaction of the subunits during the oxygenation of cobaltohemoglobin.

Authors:  J L Hoard; W R Scheidt
Journal:  Proc Natl Acad Sci U S A       Date:  1973-12       Impact factor: 11.205

10.  Stereochemistry of cooperative effects in haemoglobin.

Authors:  M F Perutz
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

  10 in total
  20 in total

1.  MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids.

Authors:  Z W Cao; Y Xue; L Y Han; B Xie; H Zhou; C J Zheng; H H Lin; Y Z Chen
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  A combined NRVS and DFT study of Fe(IV)=O model complexes: a diagnostic method for the elucidation of non-heme iron enzyme intermediates.

Authors:  Caleb B Bell; Shaun D Wong; Yuming Xiao; Eric J Klinker; Adam L Tenderholt; Matt C Smith; Jan-Uwe Rohde; Lawrence Que; Stephen P Cramer; Edward I Solomon
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

3.  Nuclear resonance vibrational spectroscopy applied to [Fe(OEP)(NO)]: the vibrational assignments of five-coordinate ferrous heme-nitrosyls and implications for electronic structure.

Authors:  Nicolai Lehnert; Mary Grace I Galinato; Florian Paulat; George B Richter-Addo; Wolfgang Sturhahn; Nan Xu; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-05-03       Impact factor: 5.165

4.  Vibrational Dynamics of Biological Molecules: Multi-quantum Contributions.

Authors:  Bogdan M Leu; J Timothy Sage; Marek Z Zgierski; Graeme R A Wyllie; Mary K Ellison; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin
Journal:  J Phys Chem Solids       Date:  2005-12       Impact factor: 3.995

5.  Vibrational spectroscopy and normal-mode analysis of Fe(II) octaethylporphyrin.

Authors:  Valeriia Starovoitova; Timo E Budarz; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; E W Prohofsky; Stephen M Durbin
Journal:  J Phys Chem B       Date:  2006-07-06       Impact factor: 2.991

6.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

7.  Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Alexander Barabanschikov; Mary K Ellison; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; Marek Z Zgierski; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-01-13       Impact factor: 5.165

8.  Spectroscopic identification of reactive porphyrin motions.

Authors:  Alexander Barabanschikov; Alexander Demidov; Minoru Kubo; Paul M Champion; J Timothy Sage; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

9.  Predicting Nuclear Resonance Vibrational Spectra of [Fe(OEP)(NO)].

Authors:  Qian Peng; Jeffrey W Pavlik; W Robert Scheidt; Olaf Wiest
Journal:  J Chem Theory Comput       Date:  2011-11-29       Impact factor: 6.006

10.  Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

Authors:  Bogdan M Leu; Marek Z Zgierski; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

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