Literature DB >> 16894397

Vibrational Dynamics of Biological Molecules: Multi-quantum Contributions.

Bogdan M Leu1, J Timothy Sage, Marek Z Zgierski, Graeme R A Wyllie, Mary K Ellison, W Robert Scheidt, Wolfgang Sturhahn, E Ercan Alp, Stephen M Durbin.   

Abstract

High-resolution X-ray measurements near a nuclear resonance reveal the complete vibrational spectrum of the probe nucleus. Because of this, nuclear resonance vibrational spectroscopy (NRVS) is a uniquely quantitative probe of the vibrational dynamics of reactive iron sites in proteins and other complex molecules. Our measurements of vibrational fundamentals have revealed both frequencies and amplitudes of (57)Fe vibrations in proteins and model compounds. Information on the direction of Fe motion has also been obtained from measurements on oriented single crystals, and provides an essential test of normal mode predictions. Here, we report the observation of weaker two-quantum vibrational excitations (overtones and combinations) for compounds that mimic the active site of heme proteins. The predicted intensities depend strongly on the direction of Fe motion. We compare the observed features with predictions based on the observed fundamentals, using information on the direction of Fe motion obtained either from DFT predictions or from single crystal measurements. Two-quantum excitations may become a useful tool to identify the directions of the Fe oscillations when single crystals are not available.

Entities:  

Year:  2005        PMID: 16894397      PMCID: PMC1513645          DOI: 10.1016/j.jpcs.2005.09.075

Source DB:  PubMed          Journal:  J Phys Chem Solids        ISSN: 0022-3697            Impact factor:   3.995


  30 in total

1.  Variable forms of soluble guanylyl cyclase: protein-ligand interactions and the issue of activation by carbon monoxide.

Authors:  K M Vogel; S Hu; T G Spiro; E A Dierks; A E Yu; J N Burstyn
Journal:  J Biol Inorg Chem       Date:  1999-12       Impact factor: 3.358

2.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

3.  Observation of Fe-H/D modes by nuclear resonant vibrational spectroscopy.

Authors:  Uwe Bergmann; Wolfgang Sturhahn; Donald E Linn; Francis E Jenney; Michael W W Adams; Kresimir Rupnik; Brian J Hales; Ercan E Alp; Aaron Mayse; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2003-04-09       Impact factor: 15.419

4.  Structural characterization of the myoglobin active site using infrared crystallography.

Authors:  J T Sage; W Jee
Journal:  J Mol Biol       Date:  1997-11-21       Impact factor: 5.469

5.  Resonance Raman characterization of soluble guanylate cyclase expressed from baculovirus.

Authors:  B Fan; G Gupta; R S Danziger; J M Friedman; D L Rousseau
Journal:  Biochemistry       Date:  1998-02-03       Impact factor: 3.162

6.  Structure of the deoxymyoglobin model [Fe(TPP)(2-MeHIm)] reveals unusual porphyrin core distortions.

Authors:  Mary K Ellison; Charles E Schulz; W Robert Scheidt
Journal:  Inorg Chem       Date:  2002-04-22       Impact factor: 5.165

7.  Anisotropic nuclear inelastic scattering of an iron(II) molecular crystal.

Authors:  H Paulsen; R Benda; C Herta; V Schünemann; A I Chumakov; L Duelund; H Winkler; H Toftlund; A X Trautwein
Journal:  Phys Rev Lett       Date:  2001-02-12       Impact factor: 9.161

8.  Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

Authors:  Bogdan M Leu; Marek Z Zgierski; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

9.  Stereochemistry of carbonylmetalloporphyrins. The structure of (pyridine)(carbonyl)(5, 10, 15, 20-tetraphenylprophinato)iron(II).

Authors:  S M Peng; J A Ibers
Journal:  J Am Chem Soc       Date:  1976-12-08       Impact factor: 15.419

10.  Iron normal mode dynamics in a porphyrin-imidazole model for deoxyheme proteins.

Authors:  Brajesh K Rai; Stephen M Durbin; Earl W Prohofsky; J Timothy Sage; Mary K Ellison; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-11-12
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  4 in total

1.  Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Alexander Barabanschikov; Mary K Ellison; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; Marek Z Zgierski; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-01-13       Impact factor: 5.165

Review 2.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

3.  Electronic structure and dynamics of nitrosyl porphyrins.

Authors:  W Robert Scheidt; Alexander Barabanschikov; Jeffrey W Pavlik; Nathan J Silvernail; J Timothy Sage
Journal:  Inorg Chem       Date:  2010-07-19       Impact factor: 5.165

4.  Quantitative vibrational dynamics of iron in carbonyl porphyrins.

Authors:  Bogdan M Leu; Nathan J Silvernail; Marek Z Zgierski; Graeme R A Wyllie; Mary K Ellison; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  Biophys J       Date:  2007-03-09       Impact factor: 4.033

  4 in total

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