Literature DB >> 16805642

Vibrational spectroscopy and normal-mode analysis of Fe(II) octaethylporphyrin.

Valeriia Starovoitova1, Timo E Budarz, Graeme R A Wyllie, W Robert Scheidt, Wolfgang Sturhahn, E Ercan Alp, E W Prohofsky, Stephen M Durbin.   

Abstract

The normal-mode spectrum for the four-coordinated heme compound Fe(II) octaethylporphyrin, Fe(OEP), has been determined by refining force constants to the experimental Fe vibrational density of states measured with nuclear resonance vibrational spectroscopy (NRVS). Convergence of the calculated spectrum to the data was achieved by first imposing D4 symmetry on the model structure as well as the force constants, progressively including different internal coordinates of motion, then allowing the true Ci (or S2) point group symmetry of the C(i)1 Fe(OEP) crystal structure. The NRVS-refined normal modes are in good agreement with Raman and IR spectra at high frequencies. Prior density functional theory predictions for a model porphyrin are similar to the core modes computed with the best-fit force field, but significant differences between D4 and Ci modes underline the sensitivity of porphyrin Fe normal modes to structural details. Some differences between the Ci best fit and the NRVS data can be attributed to intermolecular contacts not included in the normal-mode analysis.

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Year:  2006        PMID: 16805642      PMCID: PMC1525052          DOI: 10.1021/jp060345p

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  14 in total

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Authors:  A D Procyk; D F Bocian
Journal:  Annu Rev Phys Chem       Date:  1992       Impact factor: 12.703

2.  Phonon density of states measured by inelastic nuclear resonant scattering.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-05-08       Impact factor: 9.161

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Authors:  D Dolphin; J R Sams; T B Tsin; K L Wong
Journal:  J Am Chem Soc       Date:  1976-10-27       Impact factor: 15.419

4.  Motions in hemoglobin studied by normal mode analysis and energy minimization: evidence for the existence of tertiary T-like, quaternary R-like intermediate structures.

Authors:  L Mouawad; D Perahia
Journal:  J Mol Biol       Date:  1996-05-03       Impact factor: 5.469

Review 5.  Nuclear resonance vibrational spectroscopy--NRVS.

Authors:  W Robert Scheidt; Stephen M Durbin; J Timothy Sage
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

6.  Structural fluctuations of myoglobin from normal-modes, Mössbauer, Raman, and absorption spectroscopy.

Authors:  B Melchers; E W Knapp; F Parak; L Cordone; A Cupane; M Leone
Journal:  Biophys J       Date:  1996-05       Impact factor: 4.033

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Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

8.  Single-atom test of all-atom empirical potentials: Fe in myoglobin.

Authors:  Brajesh K Rai; Earl W Prohofsky; Stephen M Durbin
Journal:  J Phys Chem B       Date:  2005-10-13       Impact factor: 2.991

9.  Iron normal mode dynamics in (nitrosyl)iron(II)tetraphenylporphyrin from X-ray nuclear resonance data.

Authors:  Brajesh K Rai; Stephen M Durbin; Earl W Prohofsky; J Timothy Sage; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

10.  Direct determination of the complete set of iron normal modes in a porphyrin-imidazole model for carbonmonoxy-heme proteins: [Fe(TPP)(CO)(1-MeIm)].

Authors:  Brajesh K Rai; Stephen M Durbin; Earl W Prohofsky; J Timothy Sage; Mary K Ellison; Arne Roth; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

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  4 in total

1.  Nuclear resonance vibrational spectroscopy applied to [Fe(OEP)(NO)]: the vibrational assignments of five-coordinate ferrous heme-nitrosyls and implications for electronic structure.

Authors:  Nicolai Lehnert; Mary Grace I Galinato; Florian Paulat; George B Richter-Addo; Wolfgang Sturhahn; Nan Xu; Jiyong Zhao
Journal:  Inorg Chem       Date:  2010-05-03       Impact factor: 5.165

Review 2.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

3.  Explorations in metalloporphyrin stereochemistry, physical properties and beyond.

Authors:  W Robert Scheidt
Journal:  J Porphyr Phthalocyanines       Date:  2008       Impact factor: 1.811

4.  Intermolecular dynamics in crystalline iron octaethylporphyrin (FeOEP).

Authors:  Valeriia Starovoitova; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin
Journal:  J Phys Chem B       Date:  2008-09-13       Impact factor: 2.991

  4 in total

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