Literature DB >> 11384393

Long-range reactive dynamics in myoglobin.

J T Sage1, S M Durbin, W Sturhahn, D C Wharton, P M Champion, P Hession, J Sutter, E E Alp.   

Abstract

We report the complete vibrational spectrum of the probe nucleus 57Fe at the oxygen-binding site of the protein myoglobin. The Fe-pyrrole nitrogen stretching modes of the heme group, identified here, probe asymmetric interactions with the protein environment. Collective oscillations of the polypeptide, rather than localized heme vibrations, dominate the low frequency region. We conclude that the heme "doming" mode is significantly delocalized, so that distant sites respond to oxygen binding on vibrational time scales. This has ramifications for understanding long-range interactions in biomolecules, such as those that mediate cooperativity in allosteric proteins.

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Year:  2001        PMID: 11384393     DOI: 10.1103/PhysRevLett.86.4966

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  25 in total

1.  Doming modes and dynamics of model heme compounds.

Authors:  Dennis D Klug; Marek Z Zgierski; John S Tse; Zhenxian Liu; James R Kincaid; Kazimierz Czarnecki; Russell J Hemley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

2.  Low frequency spectral density of ferrous heme: perturbations induced by axial ligation and protein insertion.

Authors:  Flaviu Gruia; Xiong Ye; Dan Ionascu; Minoru Kubo; Paul M Champion
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

3.  A practical guide for nuclear resonance vibrational spectroscopy (NRVS) of biochemical samples and model compounds.

Authors:  Hongxin Wang; Esen Ercan Alp; Yoshitaka Yoda; Stephen P Cramer
Journal:  Methods Mol Biol       Date:  2014

4.  Vibrational Dynamics of Biological Molecules: Multi-quantum Contributions.

Authors:  Bogdan M Leu; J Timothy Sage; Marek Z Zgierski; Graeme R A Wyllie; Mary K Ellison; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin
Journal:  J Phys Chem Solids       Date:  2005-12       Impact factor: 3.995

5.  Direct probe of iron vibrations elucidates NO activation of heme proteins.

Authors:  Weiqiao Zeng; Nathan J Silvernail; David C Wharton; Georgi Y Georgiev; Bogdan M Leu; W Robert Scheidt; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

6.  Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Alexander Barabanschikov; Mary K Ellison; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; Marek Z Zgierski; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2012-01-13       Impact factor: 5.165

7.  Extended X-ray absorption fine structure and nuclear resonance vibrational spectroscopy reveal that NifB-co, a FeMo-co precursor, comprises a 6Fe core with an interstitial light atom.

Authors:  Simon J George; Robert Y Igarashi; Yuming Xiao; Jose A Hernandez; Marie Demuez; Dehua Zhao; Yoshitaka Yoda; Paul W Ludden; Luis M Rubio; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2008-04-02       Impact factor: 15.419

8.  NRVS for Fe in Biology: Experiment and Basic Interpretation.

Authors:  Leland B Gee; Hongxin Wang; Stephen P Cramer
Journal:  Methods Enzymol       Date:  2017-12-16       Impact factor: 1.600

9.  Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

Authors:  Bogdan M Leu; Marek Z Zgierski; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

10.  Quantitative vibrational dynamics of the metal site in a tin porphyrin: an IR, NRVS, and DFT study.

Authors:  Bogdan M Leu; Marek Z Zgierski; Christian Bischoff; Ming Li; Michael Y Hu; Jiyong Zhao; Steve W Martin; Esen Ercan Alp; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-08-20       Impact factor: 5.165

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