Literature DB >> 11114182

Fast kinetics of chromatin assembly revealed by single-molecule videomicroscopy and scanning force microscopy.

B Ladoux1, J P Quivy, P Doyle, O du Roure, G Almouzni, J L Viovy.   

Abstract

Fluorescence videomicroscopy and scanning force microscopy were used to follow, in real time, chromatin assembly on individual DNA molecules immersed in cell-free systems competent for physiological chromatin assembly. Within a few seconds, molecules are already compacted into a form exhibiting strong similarities to native chromatin fibers. In these extracts, the compaction rate is more than 100 times faster than expected from standard biochemical assays. Our data provide definite information on the forces involved (a few piconewtons) and on the reaction path. DNA compaction as a function of time revealed unique features of the assembly reaction in these extracts. They imply a sequential process with at least three steps, involving DNA wrapping as the final event. An absolute and quantitative measure of the kinetic parameters of the early steps in chromatin assembly under physiological conditions could thus be obtained.

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Year:  2000        PMID: 11114182      PMCID: PMC18904          DOI: 10.1073/pnas.250471597

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Protamine-induced condensation and decondensation of the same DNA molecule.

Authors:  L R Brewer; M Corzett; R Balhorn
Journal:  Science       Date:  1999-10-01       Impact factor: 47.728

2.  Dynamics of a tethered polymer in shear flow.

Authors:  P S Doyle; B Ladoux; J L Viovy
Journal:  Phys Rev Lett       Date:  2000-05-15       Impact factor: 9.161

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Authors:  A Worcel; S Han; M L Wong
Journal:  Cell       Date:  1978-11       Impact factor: 41.582

4.  Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.

Authors:  G J Wuite; S B Smith; M Young; D Keller; C Bustamante
Journal:  Nature       Date:  2000-03-02       Impact factor: 49.962

5.  Preferential association of newly synthesized histones with replicating SV40 DNA.

Authors:  C Crémisi; A Chestier; M Yaniv
Journal:  Cell       Date:  1977-12       Impact factor: 41.582

6.  Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase.

Authors:  R J Davenport; G J Wuite; R Landick; C Bustamante
Journal:  Science       Date:  2000-03-31       Impact factor: 47.728

7.  Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy.

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Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

8.  A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite.

Authors:  R H Simon; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1979-02       Impact factor: 16.971

9.  Assembly of SV40 chromatin in a cell-free system from Xenopus eggs.

Authors:  R A Laskey; A D Mills; N R Morris
Journal:  Cell       Date:  1977-02       Impact factor: 41.582

10.  Preferential association of newly synthesized H3 and H4 histones with newly replicated DNA.

Authors:  T Senshu; M Fukuda; M Ohashi
Journal:  J Biochem       Date:  1978-10       Impact factor: 3.387

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  36 in total

1.  Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

Authors:  Brent D Brower-Toland; Corey L Smith; Richard C Yeh; John T Lis; Craig L Peterson; Michelle D Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

2.  Reconstitution of recombinant chromatin establishes a requirement for histone-tail modifications during chromatin assembly and transcription.

Authors:  A Loyola; G LeRoy; Y H Wang; D Reinberg
Journal:  Genes Dev       Date:  2001-11-01       Impact factor: 11.361

Review 3.  Optical tweezers stretching of chromatin.

Authors:  Lisa H Pope; Martin L Bennink; Jan Greve
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

Review 4.  Micromechanical studies of mitotic chromosomes.

Authors:  M G Poirier; J F Marko
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

Review 5.  Stretching and imaging single DNA molecules and chromatin.

Authors:  Jordanka Zlatanova; Sanford H Leuba
Journal:  J Muscle Res Cell Motil       Date:  2002       Impact factor: 2.698

6.  Assembly of single chromatin fibers depends on the tension in the DNA molecule: magnetic tweezers study.

Authors:  Sanford H Leuba; Mikhail A Karymov; Miroslav Tomschik; Ravi Ramjit; Paul Smith; Jordanka Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-09       Impact factor: 11.205

7.  Electrokinetic stretching of tethered DNA.

Authors:  Sean Ferree; Harvey W Blanch
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

8.  A Quantitative Proteomic Analysis of In Vitro Assembled Chromatin.

Authors:  Moritz Carl Völker-Albert; Miriam Caroline Pusch; Andreas Fedisch; Pierre Schilcher; Andreas Schmidt; Axel Imhof
Journal:  Mol Cell Proteomics       Date:  2016-01-25       Impact factor: 5.911

9.  Novel, monomeric cyanine dyes as reporters for DNA helicase activity.

Authors:  Cuiling Xu; Mykhaylo Yu Losytskyy; Vladyslava B Kovalska; Dmytro V Kryvorotenko; Sergiy M Yarmoluk; Sarah McClelland; Piero R Bianco
Journal:  J Fluoresc       Date:  2007-08-03       Impact factor: 2.217

10.  Visualization of long human telomere mimics by single-molecule fluorescence imaging.

Authors:  Andrea K Pomerantz; W E Moerner; Eric T Kool
Journal:  J Phys Chem B       Date:  2008-09-26       Impact factor: 2.991

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