Literature DB >> 10990792

Dynamics of a tethered polymer in shear flow.

P S Doyle1, B Ladoux, J L Viovy.   

Abstract

The dynamics of a single polymer tethered to a solid surface in a shear flow was observed using fluorescently labeled DNA chains. Dramatic shear enhanced temporal fluctuations in the chain extension were observed. The rate of these fluctuations initially decreased for increasing shear rate gamma; and increased above a critical gamma;. Simulations revealed that these anomalous dynamics arise from a continual recirculating motion of the chain or cyclic dynamics. These dynamics arise from a coupling of the chain velocity in the flow direction to thermally driven fluctuations of the chain in the shear gradient direction.

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Year:  2000        PMID: 10990792     DOI: 10.1103/PhysRevLett.84.4769

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  33 in total

1.  Fast kinetics of chromatin assembly revealed by single-molecule videomicroscopy and scanning force microscopy.

Authors:  B Ladoux; J P Quivy; P Doyle; O du Roure; G Almouzni; J L Viovy
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Simulation of conformational preconditioning strategies for electrophoretic stretching of DNA in a microcontraction.

Authors:  Chih-Chen Hsieh; Tsung-Hsien Lin
Journal:  Biomicrofluidics       Date:  2011-11-10       Impact factor: 2.800

3.  Dynamics of two trapped Brownian particles: Shear-induced cross-correlations.

Authors:  J Bammert; L Holzer; W Zimmermann
Journal:  Eur Phys J E Soft Matter       Date:  2010-12-01       Impact factor: 1.890

4.  Mesoscopic simulation of single DNA dynamics in rotational flows.

Authors:  S Kumar Ranjith
Journal:  Eur Phys J E Soft Matter       Date:  2015-08-28       Impact factor: 1.890

5.  Single-molecule visualization of RecQ helicase reveals DNA melting, nucleation, and assembly are required for processive DNA unwinding.

Authors:  Behzad Rad; Anthony L Forget; Ronald J Baskin; Stephen C Kowalczykowski
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-04       Impact factor: 11.205

6.  Compaction kinetics on single DNAs: purified nucleosome reconstitution systems versus crude extract.

Authors:  Gaudeline Wagner; Aurélien Bancaud; Jean-Pierre Quivy; Cédric Clapier; Geneviève Almouzni; Jean-Louis Viovy
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

Review 7.  Modelling biological complexity: a physical scientist's perspective.

Authors:  Peter V Coveney; Philip W Fowler
Journal:  J R Soc Interface       Date:  2005-09-22       Impact factor: 4.118

8.  DNA relaxation dynamics as a probe for the intracellular environment.

Authors:  J K Fisher; M Ballenger; E T O'Brien; J Haase; R Superfine; K Bloom
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-28       Impact factor: 11.205

9.  DNA Molecules in Microfluidic Oscillatory Flow.

Authors:  Y-L Chen; M D Graham; J J de Pablo; K Jo; D C Schwartz
Journal:  Macromolecules       Date:  2005       Impact factor: 5.985

10.  A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

Authors:  Paul C Blainey; Antoine M van Oijen; Anirban Banerjee; Gregory L Verdine; X Sunney Xie
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-03       Impact factor: 11.205

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