Literature DB >> 9721309

Novel Escherichia coli umuD' mutants: structure-function insights into SOS mutagenesis.

M McLenigan1, T S Peat, E G Frank, J P McDonald, M Gonzalez, A S Levine, W A Hendrickson, R Woodgate.   

Abstract

Although it has been 10 years since the discovery that the Escherichia coli UmuD protein undergoes a RecA-mediated cleavage reaction to generate mutagenically active UmuD', the function of UmuD' has yet to be determined. In an attempt to elucidate the role of UmuD' in SOS mutagenesis, we have utilized a colorimetric papillation assay to screen for mutants of a hydroxylamine-treated, low-copy-number umuD' plasmid that are unable to promote SOS-dependent spontaneous mutagenesis. Using such an approach, we have identified 14 independent umuD' mutants. Analysis of these mutants revealed that two resulted from promoter changes which reduced the expression of wild-type UmuD', three were nonsense mutations that resulted in a truncated UmuD' protein, and the remaining nine were missense alterations. In addition to the hydroxylamine-generated mutants, we have subcloned the mutations found in three chromosomal umuD1, umuD44, and umuD77 alleles into umuD'. All 17 umuD' mutants resulted in lower levels of SOS-dependent spontaneous mutagenesis but varied in the extent to which they promoted methyl methanesulfonate-induced mutagenesis. We have attempted to correlate these phenotypes with the potential effect of each mutation on the recently described structure of UmuD'.

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Year:  1998        PMID: 9721309      PMCID: PMC107481     

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  38 in total

1.  The Escherichia coli galK2 papillation assay: its specificity and application to seven newly isolated mutator strains.

Authors:  A R Oller; I J Fijalkowska; R M Schaaper
Journal:  Mutat Res       Date:  1993-10       Impact factor: 2.433

2.  In vivo stability of the Umu mutagenesis proteins: a major role for RecA.

Authors:  E G Frank; M Gonzalez; D G Ennis; A S Levine; R Woodgate
Journal:  J Bacteriol       Date:  1996-06       Impact factor: 3.490

3.  Genetic requirements and mutational specificity of the Escherichia coli SOS mutator activity.

Authors:  I J Fijalkowska; R L Dunn; R M Schaaper
Journal:  J Bacteriol       Date:  1997-12       Impact factor: 3.490

4.  Analysis of the region between amino acids 30 and 42 of intact UmuD by a monocysteine approach.

Authors:  A Guzzo; M H Lee; K Oda; G C Walker
Journal:  J Bacteriol       Date:  1996-12       Impact factor: 3.490

Review 5.  Damage inducible mutagenesis: recent insights into the activities of the Umu family of mutagenesis proteins.

Authors:  R Woodgate; A S Levine
Journal:  Cancer Surv       Date:  1996

6.  Resistance to ultraviolet light in Pseudomonas syringae: sequence and functional analysis of the plasmid-encoded rulAB genes.

Authors:  G W Sundin; S P Kidambi; M Ullrich; C L Bender
Journal:  Gene       Date:  1996-10-24       Impact factor: 3.688

7.  Analyzing protein-protein interactions using two-hybrid system.

Authors:  P L Bartel; S Fields
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

8.  The UmuD' protein filament and its potential role in damage induced mutagenesis.

Authors:  T S Peat; E G Frank; J P McDonald; A S Levine; R Woodgate; W A Hendrickson
Journal:  Structure       Date:  1996-12-15       Impact factor: 5.006

9.  Regulation of SOS mutagenesis by proteolysis.

Authors:  E G Frank; D G Ennis; M Gonzalez; A S Levine; R Woodgate
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

10.  Structure of the UmuD' protein and its regulation in response to DNA damage.

Authors:  T S Peat; E G Frank; J P McDonald; A S Levine; R Woodgate; W A Hendrickson
Journal:  Nature       Date:  1996-04-25       Impact factor: 49.962

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  9 in total

1.  Converting a DNA damage checkpoint effector (UmuD2C) into a lesion bypass polymerase (UmuD'2C).

Authors:  A E Ferentz; G C Walker; G Wagner
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

2.  Mutations affecting the ability of the Escherichia coli UmuD' protein to participate in SOS mutagenesis.

Authors:  T Ohta; M D Sutton; A Guzzo; S Cole; A E Ferentz; G C Walker
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

3.  The bacteriophage P1 HumD protein is a functional homolog of the prokaryotic UmuD'-like proteins and facilitates SOS mutagenesis in Escherichia coli.

Authors:  M P McLenigan; O I Kulaeva; D G Ennis; A S Levine; R Woodgate
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

4.  The dimeric SOS mutagenesis protein UmuD is active as a monomer.

Authors:  Jaylene N Ollivierre; Jacquelyn L Sikora; Penny J Beuning
Journal:  J Biol Chem       Date:  2010-11-29       Impact factor: 5.157

5.  Genetic and biochemical characterization of a novel umuD mutation: insights into a mechanism for UmuD self-cleavage.

Authors:  M D Sutton; M Kim; G C Walker
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

6.  Y-family DNA polymerases respond to DNA damage-independent inhibition of replication fork progression.

Authors:  Veronica G Godoy; Daniel F Jarosz; Fabianne L Walker; Lyle A Simmons; Graham C Walker
Journal:  EMBO J       Date:  2006-02-16       Impact factor: 11.598

7.  Characterization of novel alleles of the Escherichia coli umuDC genes identifies additional interaction sites of UmuC with the beta clamp.

Authors:  Penny J Beuning; Sarah Chan; Lauren S Waters; Haripriya Addepalli; Jaylene N Ollivierre; Graham C Walker
Journal:  J Bacteriol       Date:  2009-07-24       Impact factor: 3.490

8.  Translesion DNA Synthesis.

Authors:  Alexandra Vaisman; John P McDonald; Roger Woodgate
Journal:  EcoSal Plus       Date:  2012-11

9.  Polymerase manager protein UmuD directly regulates Escherichia coli DNA polymerase III α binding to ssDNA.

Authors:  Kathy R Chaurasiya; Clarissa Ruslie; Michelle C Silva; Lukas Voortman; Philip Nevin; Samer Lone; Penny J Beuning; Mark C Williams
Journal:  Nucleic Acids Res       Date:  2013-07-30       Impact factor: 16.971

  9 in total

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