Literature DB >> 21118802

The dimeric SOS mutagenesis protein UmuD is active as a monomer.

Jaylene N Ollivierre1, Jacquelyn L Sikora, Penny J Beuning.   

Abstract

The homodimeric umuD gene products play key roles in regulating the cellular response to DNA damage in Escherichia coli. UmuD(2) is composed of 139-amino acid subunits and is up-regulated as part of the SOS response. Subsequently, damage-induced RecA·ssDNA nucleoprotein filaments mediate the slow self-cleavage of the N-terminal 24-amino acid arms yielding UmuD'(2). UmuD(2) and UmuD'(2) make a number of distinct protein-protein contacts that both prevent and facilitate mutagenic translesion synthesis. Wild-type UmuD(2) and UmuD'(2) form exceptionally tight dimers in solution; however, we show that the single amino acid change N41D generates stable, active UmuD and UmuD' monomers that functionally mimic the dimeric wild-type proteins. The UmuD N41D monomer is proficient for cleavage and interacts physically with DNA polymerase IV (DinB) and the β clamp. Furthermore, the N41D variants facilitate UV-induced mutagenesis and promote overall cell viability. Taken together, these observations show that a monomeric form of UmuD retains substantial function in vivo and in vitro.

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Year:  2010        PMID: 21118802      PMCID: PMC3030365          DOI: 10.1074/jbc.M110.167254

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  67 in total

1.  A model for a umuDC-dependent prokaryotic DNA damage checkpoint.

Authors:  T Opperman; S Murli; B T Smith; G C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

2.  Converting a DNA damage checkpoint effector (UmuD2C) into a lesion bypass polymerase (UmuD'2C).

Authors:  A E Ferentz; G C Walker; G Wagner
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

3.  Intein-mediated affinity-fusion purification of the Escherichia coli RecA protein.

Authors:  Scott F Singleton; Rebecca A Simonette; Neil C Sharma; Alberto I Roca
Journal:  Protein Expr Purif       Date:  2002-12       Impact factor: 1.650

Review 4.  Flexible nets. The roles of intrinsic disorder in protein interaction networks.

Authors:  A Keith Dunker; Marc S Cortese; Pedro Romero; Lilia M Iakoucheva; Vladimir N Uversky
Journal:  FEBS J       Date:  2005-10       Impact factor: 5.542

5.  Nascent DNA processing by RecJ favors lesion repair over translesion synthesis at arrested replication forks in Escherichia coli.

Authors:  Charmain T Courcelle; Kin-Hoe Chow; Andrew Casey; Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-05       Impact factor: 11.205

6.  Molecular analysis of the UV protection and mutation genes carried by the I incompatibility group plasmid TP110.

Authors:  J A Glazebrook; K K Grewal; P Strike
Journal:  J Bacteriol       Date:  1986-10       Impact factor: 3.490

7.  UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

Authors:  M Tang; X Shen; E G Frank; M O'Donnell; R Woodgate; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

8.  A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems.

Authors:  B P Dalrymple; K Kongsuwan; G Wijffels; N E Dixon; P A Jennings
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

9.  The Roles of UmuD in Regulating Mutagenesis.

Authors:  Jaylene N Ollivierre; Jing Fang; Penny J Beuning
Journal:  J Nucleic Acids       Date:  2010-09-30

10.  Identification of specific amino acid residues in the E. coli beta processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD'.

Authors:  Jill M Duzen; Graham C Walker; Mark D Sutton
Journal:  DNA Repair (Amst)       Date:  2004-03-04
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  6 in total

1.  Homodimerization and heterodimerization requirements of Acinetobacter baumannii SOS response coregulators UmuDAb and DdrR revealed by two-hybrid analyses.

Authors:  Deborah Cook; Jordan Carrington; Kevin Johnson; Janelle Hare
Journal:  Can J Microbiol       Date:  2020-11-12       Impact factor: 2.419

2.  Characterization of Escherichia coli UmuC active-site loops identifies variants that confer UV hypersensitivity.

Authors:  Lisa A Hawver; Caitlin A Gillooly; Penny J Beuning
Journal:  J Bacteriol       Date:  2011-07-22       Impact factor: 3.490

3.  The Acinetobacter regulatory UmuDAb protein cleaves in response to DNA damage with chimeric LexA/UmuD characteristics.

Authors:  Janelle M Hare; Sabal Adhikari; Kasandra V Lambert; Alexander E Hare; Alison N Grice
Journal:  FEMS Microbiol Lett       Date:  2012-07-05       Impact factor: 2.742

4.  Structural model of the Y-Family DNA polymerase V/RecA mutasome.

Authors:  Sushil Chandani; Edward L Loechler
Journal:  J Mol Graph Model       Date:  2012-11-27       Impact factor: 2.518

5.  Altering the N-terminal arms of the polymerase manager protein UmuD modulates protein interactions.

Authors:  David A Murison; Jaylene N Ollivierre; Qiuying Huang; David E Budil; Penny J Beuning
Journal:  PLoS One       Date:  2017-03-08       Impact factor: 3.240

6.  Effects of multimerization on the temporal variability of protein complex abundance.

Authors:  Antti Häkkinen; Huy Tran; Olli Yli-Harja; Brian Ingalls; Andre S Ribeiro
Journal:  BMC Syst Biol       Date:  2013-08-12
  6 in total

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