Literature DB >> 8614470

Structure of the UmuD' protein and its regulation in response to DNA damage.

T S Peat1, E G Frank, J P McDonald, A S Levine, R Woodgate, W A Hendrickson.   

Abstract

For life to be sustained, mistakes in DNA repair must be tolerated when damage obscures the genetic information. In bacteria such as Escherichia coli, DNA damage elicits the well regulated 'SOS response'. For the extreme case of damage that cannot be repaired by conventional enzymes, there are proteins that allow the replication of DNA through such lesions, but with a reduction in the fidelity of replication. Essential proteins in this mutagenic process are RecA, DNA polymerase III, UmuD, UmuD' and UmuC (umu: UV mutagenesis). Regulation of this response involves a RecA-mediated self-cleavage of UmuD to produce UmuD'. To understand this system in more detail, we have determined the crystal structure of the E. coli UmuD' mutagenesis protein at 2.5 A resolution. Globular heads folded in an unusual Beta-structure associate to form molecular dimers, and extended amino-terminal tails associate to produce crystallized filaments. The structure provides insight into the mechanism of the self-cleavage reaction that UmuD-like proteins undergo as part of the global SOS response.

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Year:  1996        PMID: 8614470     DOI: 10.1038/380727a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  50 in total

1.  umuDC-mediated cold sensitivity is a manifestation of functions of the UmuD(2)C complex involved in a DNA damage checkpoint control.

Authors:  M D Sutton; G C Walker
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  Posttranslational modification of the umuD-encoded subunit of Escherichia coli DNA polymerase V regulates its interactions with the beta processivity clamp.

Authors:  Mark D Sutton; Issay Narumi; Graham C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

3.  Converting a DNA damage checkpoint effector (UmuD2C) into a lesion bypass polymerase (UmuD'2C).

Authors:  A E Ferentz; G C Walker; G Wagner
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

4.  Structure of malonamidase E2 reveals a novel Ser-cisSer-Lys catalytic triad in a new serine hydrolase fold that is prevalent in nature.

Authors:  Sejeong Shin; Tae-Hee Lee; Nam-Chul Ha; Hyun Min Koo; So-Yeon Kim; Heung-Soo Lee; Yu Sam Kim; Byung-Ha Oh
Journal:  EMBO J       Date:  2002-06-03       Impact factor: 11.598

5.  The preferred substrate for RecA-mediated cleavage of bacteriophage 434 repressor is the DNA-bound dimer.

Authors:  David R Pawlowski; Gerald B Koudelka
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

6.  Crystallization and preliminary X-ray studies of the C-terminal domain of Mycobacterium tuberculosis LexA.

Authors:  Anu V Chandran; J Rajan Prabu; G P Manjunath; K Neelakanteshwar Patil; K Muniyappa; M Vijayan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-08-28

7.  Common protein architecture and binding sites in proteases utilizing a Ser/Lys dyad mechanism.

Authors:  M Paetzel; N C Strynadka
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

8.  Expression, purification and crystallization of a birnavirus-encoded protease, VP4, from blotched snakehead virus (BSNV).

Authors:  Jaeyong Lee; Anat R Feldman; Bernard Delmas; Mark Paetzel
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-03-10

9.  Novel Escherichia coli umuD' mutants: structure-function insights into SOS mutagenesis.

Authors:  M McLenigan; T S Peat; E G Frank; J P McDonald; M Gonzalez; A S Levine; W A Hendrickson; R Woodgate
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

10.  Regulation of SOS mutagenesis by proteolysis.

Authors:  E G Frank; D G Ennis; M Gonzalez; A S Levine; R Woodgate
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

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