Literature DB >> 9864328

Mutations affecting the ability of the Escherichia coli UmuD' protein to participate in SOS mutagenesis.

T Ohta1, M D Sutton, A Guzzo, S Cole, A E Ferentz, G C Walker.   

Abstract

The products of the SOS-regulated umuDC operon are required for most UV and chemical mutagenesis in Escherichia coli, a process that results from a translesion synthesis mechanism. The UmuD protein is activated for its role in mutagenesis by a RecA-facilitated autodigestion that removes the N-terminal 24 amino acids. A previous genetic screen for nonmutable umuD mutants had resulted in the isolation of a set of missense mutants that produced UmuD proteins that were deficient in RecA-mediated cleavage (J. R. Battista, T. Ohta, T. Nohmi, W. Sun, and G. C. Walker, Proc. Natl. Acad. Sci. USA 87:7190-7194, 1990). To identify elements of the UmuD' protein necessary for its role in translesion synthesis, we began with umuD', a modified form of the umuD gene that directly encodes the UmuD' protein, and obtained missense umuD' mutants deficient in UV and methyl methanesulfonate mutagenesis. The D39G, L40R, and T51I mutations affect residues located at the UmuD'2 homodimer interface and interfere with homodimer formation in vivo. The D75A mutation affects a highly conserved residue located at one end of the central strand in a three-stranded beta-sheet and appears to interfere with UmuD'2 homodimer formation indirectly by affecting the structure of the UmuD' monomer. When expressed from a multicopy plasmid, the L40R umuD' mutant gene exhibited a dominant negative effect on a chromosomal umuD+ gene with respect to UV mutagenesis, suggesting that the mutation has an effect on UmuD' function that goes beyond its impairment of homodimer formation. The G129D mutation affects a highly conserved residue that lies at the end of the long C-terminal beta-strand and results in a mutant UmuD' protein that exhibits a strongly dominant negative effect on UV mutagenesis in a umuD+ strain. The A30V and E35K mutations alter residues in the N-terminal arms of the UmuD'2 homodimer, which are mobile in solution.

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Year:  1999        PMID: 9864328      PMCID: PMC103547     

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  36 in total

1.  Dimerization of the UmuD' protein in solution and its implications for regulation of SOS mutagenesis.

Authors:  A E Ferentz; T Opperman; G C Walker; G Wagner
Journal:  Nat Struct Biol       Date:  1997-12

2.  The genetic requirements for UmuDC-mediated cold sensitivity are distinct from those for SOS mutagenesis.

Authors:  T Opperman; S Murli; G C Walker
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

3.  Analysis of the region between amino acids 30 and 42 of intact UmuD by a monocysteine approach.

Authors:  A Guzzo; M H Lee; K Oda; G C Walker
Journal:  J Bacteriol       Date:  1996-12       Impact factor: 3.490

Review 4.  Mutagenesis and more: umuDC and the Escherichia coli SOS response.

Authors:  B T Smith; G C Walker
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

5.  Quantitation of the inhibition of Hfr x F- recombination by the mutagenesis complex UmuD'C.

Authors:  F Boudsocq; M Campbell; R Devoret; A Bailone
Journal:  J Mol Biol       Date:  1997-07-11       Impact factor: 5.469

6.  The UmuD' protein filament and its potential role in damage induced mutagenesis.

Authors:  T S Peat; E G Frank; J P McDonald; A S Levine; R Woodgate; W A Hendrickson
Journal:  Structure       Date:  1996-12-15       Impact factor: 5.006

7.  Regulation of SOS mutagenesis by proteolysis.

Authors:  E G Frank; D G Ennis; M Gonzalez; A S Levine; R Woodgate
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

8.  Biochemical basis of SOS-induced mutagenesis in Escherichia coli: reconstitution of in vitro lesion bypass dependent on the UmuD'2C mutagenic complex and RecA protein.

Authors:  M Tang; I Bruck; R Eritja; J Turner; E G Frank; R Woodgate; M O'Donnell; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

Review 9.  Mutagenesis induced by bacterial UmuDC proteins and their plasmid homologues.

Authors:  R Woodgate; S G Sedgwick
Journal:  Mol Microbiol       Date:  1992-08       Impact factor: 3.501

10.  Structure of the UmuD' protein and its regulation in response to DNA damage.

Authors:  T S Peat; E G Frank; J P McDonald; A S Levine; R Woodgate; W A Hendrickson
Journal:  Nature       Date:  1996-04-25       Impact factor: 49.962

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  15 in total

1.  umuDC-mediated cold sensitivity is a manifestation of functions of the UmuD(2)C complex involved in a DNA damage checkpoint control.

Authors:  M D Sutton; G C Walker
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  A model for a umuDC-dependent prokaryotic DNA damage checkpoint.

Authors:  T Opperman; S Murli; B T Smith; G C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

3.  umuDC-dnaQ Interaction and its implications for cell cycle regulation and SOS mutagenesis in Escherichia coli.

Authors:  M D Sutton; S Murli; T Opperman; C Klein; G C Walker
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

4.  Posttranslational modification of the umuD-encoded subunit of Escherichia coli DNA polymerase V regulates its interactions with the beta processivity clamp.

Authors:  Mark D Sutton; Issay Narumi; Graham C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

5.  Converting a DNA damage checkpoint effector (UmuD2C) into a lesion bypass polymerase (UmuD'2C).

Authors:  A E Ferentz; G C Walker; G Wagner
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

6.  Isolation of SOS constitutive mutants of Escherichia coli.

Authors:  Erin K O'Reilly; Kenneth N Kreuzer
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

7.  Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation.

Authors:  Rose T Byrne; Stefanie H Chen; Elizabeth A Wood; Eric L Cabot; Michael M Cox
Journal:  J Bacteriol       Date:  2014-07-21       Impact factor: 3.490

8.  The Escherichia coli SOS mutagenesis proteins UmuD and UmuD' interact physically with the replicative DNA polymerase.

Authors:  M D Sutton; T Opperman; G C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

9.  Genetic interactions between the Escherichia coli umuDC gene products and the beta processivity clamp of the replicative DNA polymerase.

Authors:  M D Sutton; M F Farrow; B M Burton; G C Walker
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

10.  Characterization of novel alleles of the Escherichia coli umuDC genes identifies additional interaction sites of UmuC with the beta clamp.

Authors:  Penny J Beuning; Sarah Chan; Lauren S Waters; Haripriya Addepalli; Jaylene N Ollivierre; Graham C Walker
Journal:  J Bacteriol       Date:  2009-07-24       Impact factor: 3.490

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