Literature DB >> 9541401

Anion binding to the ubiquitin molecule.

G I Makhatadze1, M M Lopez, J M Richardson, S T Thomas.   

Abstract

Effects of different salts (NaCl, MgCl2, CaCl2, GdmCl, NaBr, NaClO4, NaH2PO4, Na2SO4) on the stability of the ubiquitin molecule at pH 2.0 have been studied by differential scanning calorimetry, circular dichroism, and Tyr fluorescence spectroscopies. It is shown that all of the salts studied significantly increase the thermostability of the ubiquitin molecule, and that this stabilization can be interpreted in terms of anion binding. Estimated thermodynamic parameters of binding for Cl- show that this binding is relatively weak (Kd = 0.15 M) and is characterized by a negative enthalpy of -15 kJ/mol per site. Particularly surprising was the observed stabilizing effect of GdmCl through the entire concentration range studied (0.01-2 M), however, to a lesser extent than stabilization by NaCl. This stabilizing effect of GdmCl appears to arise from the binding of Cl- ions. Analysis of the observed changes in the stability of the ubiquitin molecule in the presence of GdmCl can be adequately described by combining the thermodynamic model of denaturant binding with Cl- binding effects.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9541401      PMCID: PMC2143947          DOI: 10.1002/pro.5560070318

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  50 in total

1.  Negative electrostatic surface potential of protein sites specific for anionic ligands.

Authors:  P S Ledvina; N Yao; A Choudhary; F A Quiocho
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

2.  A model-independent, nonlinear extrapolation procedure for the characterization of protein folding energetics from solvent-denaturation data.

Authors:  B Ibarra-Molero; J M Sanchez-Ruiz
Journal:  Biochemistry       Date:  1996-11-26       Impact factor: 3.162

3.  The effect of denaturants on protein structure.

Authors:  J Dunbar; H P Yennawar; S Banerjee; J Luo; G K Farber
Journal:  Protein Sci       Date:  1997-08       Impact factor: 6.725

4.  Scanning microcalorimetry in studying temperature-induced changes in proteins.

Authors:  P L Privalov; S A Potekhin
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

5.  Crystallographic study of the interaction of urea with lysozyme.

Authors:  K W Snape; R Tjian; C C Blake; D E Koshland
Journal:  Nature       Date:  1974-07-26       Impact factor: 49.962

6.  Selective binding and solvent denaturation.

Authors:  J A Schellman
Journal:  Biopolymers       Date:  1987-04       Impact factor: 2.505

7.  The yeast polyubiquitin gene is essential for resistance to high temperatures, starvation, and other stresses.

Authors:  D Finley; E Ozkaynak; A Varshavsky
Journal:  Cell       Date:  1987-03-27       Impact factor: 41.582

8.  Guanidine hydrochloride unfolding of peptide helices: separation of denaturant and salt effects.

Authors:  J S Smith; J M Scholtz
Journal:  Biochemistry       Date:  1996-06-04       Impact factor: 3.162

9.  The peptide backbone plays a dominant role in protein stabilization by naturally occurring osmolytes.

Authors:  Y Liu; D W Bolen
Journal:  Biochemistry       Date:  1995-10-03       Impact factor: 3.162

10.  Salt effects on polyelectrolyte-ligand binding: comparison of Poisson-Boltzmann, and limiting law/counterion binding models.

Authors:  K A Sharp; R A Friedman; V Misra; J Hecht; B Honig
Journal:  Biopolymers       Date:  1995-08       Impact factor: 2.505

View more
  33 in total

1.  Contribution of proton linkage to the thermodynamic stability of the major cold-shock protein of Escherichia coli CspA.

Authors:  S A Petrosian; G I Makhatadze
Journal:  Protein Sci       Date:  2000-02       Impact factor: 6.725

2.  The sarcosine effect on protein stability: a case of nonadditivity?

Authors:  B Ibarra-Molero; I M Plaza del Pino; B Souhail; H O Hammou; J M Sanchez-Ruiz
Journal:  Protein Sci       Date:  2000-04       Impact factor: 6.725

3.  pH corrections and protein ionization in water/guanidinium chloride.

Authors:  M M Garcia-Mira; J M Sanchez-Ruiz
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

4.  Removal of surface charge-charge interactions from ubiquitin leaves the protein folded and very stable.

Authors:  Vakhtang V Loladze; George I Makhatadze
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

5.  Heat capacity changes upon burial of polar and nonpolar groups in proteins.

Authors:  V V Loladze; D N Ermolenko; G I Makhatadze
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

6.  Electrothermal supercharging of proteins in native electrospray ionization.

Authors:  Harry J Sterling; Catherine A Cassou; Anna C Susa; Evan R Williams
Journal:  Anal Chem       Date:  2012-03-19       Impact factor: 6.986

7.  Reversible mechanical unfolding of single ubiquitin molecules.

Authors:  Chia-Lin Chyan; Fan-Chi Lin; Haibo Peng; Jian-Min Yuan; Chung-Hung Chang; Sheng-Hsien Lin; Guoliang Yang
Journal:  Biophys J       Date:  2004-09-10       Impact factor: 4.033

8.  The efficiency of different salts to screen charge interactions in proteins: a Hofmeister effect?

Authors:  Raul Perez-Jimenez; Raquel Godoy-Ruiz; Beatriz Ibarra-Molero; Jose M Sanchez-Ruiz
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

9.  A docked state conformational dynamics model to explain the ionic strength dependence of FMN - heme electron transfer in nitric oxide synthase.

Authors:  Andrei V Astashkin; Jinghui Li; Huayu Zheng; Yubin Miao; Changjian Feng
Journal:  J Inorg Biochem       Date:  2018-03-26       Impact factor: 4.155

10.  Ultrafast vibrational spectroscopy of a degenerate mode of guanidinium chloride.

Authors:  Dmitriy Yu Vorobyev; Chun-Hung Kuo; Jian-Xin Chen; Daniel G Kuroda; J Nathan Scott; Jane M Vanderkooi; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-11-19       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.