Literature DB >> 8692896

Negative electrostatic surface potential of protein sites specific for anionic ligands.

P S Ledvina1, N Yao, A Choudhary, F A Quiocho.   

Abstract

Determination of the crystal structure of an "open" unliganded active mutant (T141D) form of the Escherichia coli phosphate receptor for active transport has allowed calculation of the electrostatic surface potential for it and two other comparably modeled receptor structures (wild type and D137N). A discovery of considerable implication is the intensely negative potential of the phosphate-binding cleft. We report similar findings for a sulfate transport receptor, a DNA-binding protein, and, even more dramatically, redox proteins. Evidently, for proteins such as these, which rely almost exclusively on hydrogen bonding for anion interactions and electrostatic balance, a noncomplementary surface potential is not a barrier to binding. Moreover, experimental results show that the exquisite specificity and high affinity of the phosphate and sulfate receptors for unions are insensitive to modulations of charge potential, but extremely sensitive to conditions that leave a hydrogen bond donor or acceptor unpaired.

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Year:  1996        PMID: 8692896      PMCID: PMC39105          DOI: 10.1073/pnas.93.13.6786

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Dipoles localized at helix termini of proteins stabilize charges.

Authors:  J Aqvist; H Luecke; F A Quiocho; A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-01       Impact factor: 11.205

2.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

3.  Stabilization of charges on isolated ionic groups sequestered in proteins by polarized peptide units.

Authors:  F A Quiocho; J S Sack; N K Vyas
Journal:  Nature       Date:  1987 Oct 8-14       Impact factor: 49.962

4.  Dominant role of local dipoles in stabilizing uncompensated charges on a sulfate sequestered in a periplasmic active transport protein.

Authors:  J J He; F A Quiocho
Journal:  Protein Sci       Date:  1993-10       Impact factor: 6.725

5.  The immunodominant 38-kDa lipoprotein antigen of Mycobacterium tuberculosis is a phosphate-binding protein.

Authors:  Z Chang; A Choudhary; R Lathigra; F A Quiocho
Journal:  J Biol Chem       Date:  1994-01-21       Impact factor: 5.157

6.  High specificity of a phosphate transport protein determined by hydrogen bonds.

Authors:  H Luecke; F A Quiocho
Journal:  Nature       Date:  1990-09-27       Impact factor: 49.962

7.  Substrate binding and catalysis by glutathione reductase as derived from refined enzyme: substrate crystal structures at 2 A resolution.

Authors:  P A Karplus; G E Schulz
Journal:  J Mol Biol       Date:  1989-11-05       Impact factor: 5.469

8.  Fine tuning the specificity of the periplasmic phosphate transport receptor. Site-directed mutagenesis, ligand binding, and crystallographic studies.

Authors:  Z Wang; A Choudhary; P S Ledvina; F A Quiocho
Journal:  J Biol Chem       Date:  1994-10-07       Impact factor: 5.157

9.  Sulphate sequestered in the sulphate-binding protein of Salmonella typhimurium is bound solely by hydrogen bonds.

Authors:  J W Pflugrath; F A Quiocho
Journal:  Nature       Date:  1985 Mar 21-27       Impact factor: 49.962

10.  DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex.

Authors:  A Lahm; D Suck
Journal:  J Mol Biol       Date:  1991-12-05       Impact factor: 5.469

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  23 in total

1.  Role of cationic amino acids in the Na+/dicarboxylate co-transporter NaDC-1.

Authors:  A M Pajor; E S Kahn; R Gangula
Journal:  Biochem J       Date:  2000-09-15       Impact factor: 3.857

2.  Construction of a fluorescent biosensor family.

Authors:  Robert M de Lorimier; J Jeff Smith; Mary A Dwyer; Loren L Looger; Kevin M Sali; Chad D Paavola; Shahir S Rizk; Shamil Sadigov; David W Conrad; Leslie Loew; Homme W Hellinga
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

3.  Anion recognition based on halogen bonding: a case study of macrocyclic imidazoliophane receptors.

Authors:  Yunxiang Lu; Haiying Li; Xiang Zhu; Honglai Liu; Weiliang Zhu
Journal:  J Mol Model       Date:  2012-01-18       Impact factor: 1.810

4.  Periplasmic domain of the sensor-kinase BvgS reveals a new paradigm for the Venus flytrap mechanism.

Authors:  Julien Herrou; Coralie Bompard; René Wintjens; Elian Dupré; Eve Willery; Vincent Villeret; Camille Locht; Rudy Antoine; Françoise Jacob-Dubuisson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-20       Impact factor: 11.205

5.  Dominant role of local dipolar interactions in phosphate binding to a receptor cleft with an electronegative charge surface: equilibrium, kinetic, and crystallographic studies.

Authors:  P S Ledvina; A L Tsai; Z Wang; E Koehl; F A Quiocho
Journal:  Protein Sci       Date:  1998-12       Impact factor: 6.725

6.  Crystal structure of the effector-binding domain of the trehalose-repressor of Escherichia coli, a member of the LacI family, in its complexes with inducer trehalose-6-phosphate and noninducer trehalose.

Authors:  U Hars; R Horlacher; W Boos; W Welte; K Diederichs
Journal:  Protein Sci       Date:  1998-12       Impact factor: 6.725

7.  Solvation counteracts coulombic repulsion in the binding of two cations to a model hexapeptide.

Authors:  Hongqi Ai; Chong Zhang; Wei He; Kwaichow Chan; Qiang Li
Journal:  J Mol Model       Date:  2011-03-29       Impact factor: 1.810

8.  Anion binding to the ubiquitin molecule.

Authors:  G I Makhatadze; M M Lopez; J M Richardson; S T Thomas
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

9.  The molecular basis of phosphate discrimination in arsenate-rich environments.

Authors:  Mikael Elias; Alon Wellner; Korina Goldin-Azulay; Eric Chabriere; Julia A Vorholt; Tobias J Erb; Dan S Tawfik
Journal:  Nature       Date:  2012-10-03       Impact factor: 49.962

10.  Molecular dynamics simulations of galectin-1-oligosaccharide complexes reveal the molecular basis for ligand diversity.

Authors:  Michael G Ford; Thomas Weimar; Thies Köhli; Robert J Woods
Journal:  Proteins       Date:  2003-11-01
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