Literature DB >> 10794425

The sarcosine effect on protein stability: a case of nonadditivity?

B Ibarra-Molero1, I M Plaza del Pino, B Souhail, H O Hammou, J M Sanchez-Ruiz.   

Abstract

We have used differential scanning calorimetry to determine the effect of low concentrations (C = 0-2 M) of the osmolyte sarcosine on the Gibbs energy changes (deltaG) for the unfolding of hen-egg-white lysozyme, ribonuclease A, and ubiquitin, under the same buffer and pH conditions. We have also computed this effect on the basis of the additivity assumption and using published values of the transfer Gibbs energies for the amino acid side chains and the peptide backbone unit. The values thus predicted for the slope delta deltaG/deltaC agree with the experimental ones, but only if the unfolded state is assumed to be compact (that is, if the accessibility to solvent of the unfolded state is modeled using segments excised from native structures). The additivity-based calculations predict similar delta deltaG/deltaC values for the three proteins studied. We point out that, to the extent that this approximate constancy of delta deltaG/deltaC holds, osmolyte-induced increases in denaturation temperature will be larger for proteins with low unfolding enthalpy (small proteins that bury a large proportion of apolar surface). The experimental results reported here are consistent with this hypothesis.

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Year:  2000        PMID: 10794425      PMCID: PMC2144605          DOI: 10.1110/ps.9.4.820

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  17 in total

1.  Modeling unfolded states of peptides and proteins.

Authors:  T P Creamer; R Srinivasan; G D Rose
Journal:  Biochemistry       Date:  1995-12-19       Impact factor: 3.162

2.  Osmolyte-driven contraction of a random coil protein.

Authors:  Y Qu; C L Bolen; D W Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

3.  The enthalpy change in protein folding and binding: refinement of parameters for structure-based calculations.

Authors:  V J Hilser; J Gómez; E Freire
Journal:  Proteins       Date:  1996-10

4.  Anion binding to the ubiquitin molecule.

Authors:  G I Makhatadze; M M Lopez; J M Richardson; S T Thomas
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

5.  A model-independent, nonlinear extrapolation procedure for the characterization of protein folding energetics from solvent-denaturation data.

Authors:  B Ibarra-Molero; J M Sanchez-Ruiz
Journal:  Biochemistry       Date:  1996-11-26       Impact factor: 3.162

6.  Modeling unfolded states of proteins and peptides. II. Backbone solvent accessibility.

Authors:  T P Creamer; R Srinivasan; G D Rose
Journal:  Biochemistry       Date:  1997-03-11       Impact factor: 3.162

Review 7.  Energetics of protein structure.

Authors:  G I Makhatadze; P L Privalov
Journal:  Adv Protein Chem       Date:  1995

8.  Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability.

Authors:  B Ibarra-Molero; V V Loladze; G I Makhatadze; J M Sanchez-Ruiz
Journal:  Biochemistry       Date:  1999-06-22       Impact factor: 3.162

9.  A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation.

Authors:  A Wang; D W Bolen
Journal:  Biochemistry       Date:  1997-07-29       Impact factor: 3.162

10.  Cold denaturation of ubiquitin.

Authors:  B Ibarra-Molero; G I Makhatadze; J M Sanchez-Ruiz
Journal:  Biochim Biophys Acta       Date:  1999-01-11
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  3 in total

1.  The efficiency of different salts to screen charge interactions in proteins: a Hofmeister effect?

Authors:  Raul Perez-Jimenez; Raquel Godoy-Ruiz; Beatriz Ibarra-Molero; Jose M Sanchez-Ruiz
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

2.  Energetic and structural consequences of desolvation/solvation barriers to protein folding/unfolding assessed from experimental unfolding rates.

Authors:  David Rodriguez-Larrea; Beatriz Ibarra-Molero; Jose M Sanchez-Ruiz
Journal:  Biophys J       Date:  2006-06-23       Impact factor: 4.033

3.  The oxidative stress and metabolic response of Acinetobacter baumannii for aPDT multiple photosensitization.

Authors:  Ewelina Wanarska; Karolina Anna Mielko; Irena Maliszewska; Piotr Młynarz
Journal:  Sci Rep       Date:  2022-02-03       Impact factor: 4.379

  3 in total

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