Literature DB >> 8962034

Symmetry and the energy landscapes of biomolecules.

P G Wolynes1.   

Abstract

The role of symmetry in the folding of proteins is discussed using energy landscape theory. An analytical argument shows it is much easier to find sequences with funneled energy landscape capable of fast folding if the structure is symmetric. The analogy with phase transitions of small clusters with magic numbers is discussed.

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Year:  1996        PMID： 8962034      PMCID： PMC34469          DOI： 10.1073/pnas.93.25.14249

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  27 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

2.  Allosteric proteins and cellular control systems.

Authors:  J MONOD; J P CHANGEUX; F JACOB
Journal:  J Mol Biol       Date:  1963-04       Impact factor: 5.469

3.  Structure of small viruses.

Authors:  F H CRICK; J D WATSON
Journal:  Nature       Date:  1956-03-10       Impact factor: 49.962

4.  Role of subunit interfaces in the allosteric mechanism of hemoglobin.

Authors:  C Chothia; S Wodak; J Janin
Journal:  Proc Natl Acad Sci U S A       Date:  1976-11       Impact factor: 11.205

5.  Why are some proteins structures so common?

Authors:  S Govindarajan; R A Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-16       Impact factor: 11.205

Review 6.  Why are the same protein folds used to perform different functions?

Authors:  A V Finkelstein; A M Gutun
Journal:  FEBS Lett       Date:  1993-06-28       Impact factor: 4.124

Review 7.  Pathways of protein folding.

Authors:  C R Matthews
Journal:  Annu Rev Biochem       Date:  1993       Impact factor: 23.643

8.  A new approach to the design of stable proteins.

Authors:  E I Shakhnovich; A M Gutin
Journal:  Protein Eng       Date:  1993-11

Review 9.  The anatomy and taxonomy of protein structure.

Authors:  J S Richardson
Journal:  Adv Protein Chem       Date:  1981

10.  Spin glasses and the statistical mechanics of protein folding.

Authors:  J D Bryngelson; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205
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  69 in total

1.  Diversity of functions of proteins with internal symmetry in spatial arrangement of secondary structural elements.

Authors:  K Kinoshita; A Kidera; N Go
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

2.  Investigation of routes and funnels in protein folding by free energy functional methods.

Authors:  S S Plotkin; J N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

3.  A minimalist model protein with multiple folding funnels.

Authors:  C R Locker; R Hernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

4.  Macromolecular organization of the Yersinia pestis capsular F1 antigen: insights from time-of-flight mass spectrometry.

Authors:  M A Tito; J Miller; K F Griffin; E D Williamson; R W Titball; C V Robinson
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

5.  Natural selection of more designable folds: a mechanism for thermophilic adaptation.

Authors:  Jeremy L England; Boris E Shakhnovich; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-03       Impact factor: 11.205

6.  Designability of alpha-helical proteins.

Authors:  Eldon G Emberly; Ned S Wingreen; Chao Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

7.  Protein evolution within a structural space.

Authors:  Eric J Deeds; Nikolay V Dokholyan; Eugene I Shakhnovich
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

8.  Geometry and symmetry presculpt the free-energy landscape of proteins.

Authors:  Trinh Xuan Hoang; Antonio Trovato; Flavio Seno; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

9.  Imprint of evolution on protein structures.

Authors:  Guido Tiana; Boris E Shakhnovich; Nikolay V Dokholyan; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-17       Impact factor: 11.205

10.  Optimizing ring assembly reveals the strength of weak interactions.

Authors:  Eric J Deeds; John A Bachman; Walter Fontana
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205
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