| Literature DB >> 15148372 |
Trinh Xuan Hoang1, Antonio Trovato, Flavio Seno, Jayanth R Banavar, Amos Maritan.
Abstract
We present a simple physical model that demonstrates that the native-state folds of proteins can emerge on the basis of considerations of geometry and symmetry. We show that the inherent anisotropy of a chain molecule, the geometrical and energetic constraints placed by the hydrogen bonds and sterics, and hydrophobicity are sufficient to yield a free-energy landscape with broad minima even for a homopolymer. These minima correspond to marginally compact structures comprising the menu of folds that proteins choose from to house their native states in. Our results provide a general framework for understanding the common characteristics of globular proteins.Entities:
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Year: 2004 PMID: 15148372 PMCID: PMC419539 DOI: 10.1073/pnas.0402525101
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 11.205