Literature DB >> 8513888

Why are the same protein folds used to perform different functions?

A V Finkelstein1, A M Gutun.   

Abstract

A small number of folding patterns describe in outline most of the known protein globules, the same folds being found in non-homologous proteins with different functions. We show that the 'popular' folding patterns are those which, due to some thermodynamic advantages of their structure, can be stabilized by a lot of random sequences. In contrast, the folds which are rarely or never observed in natural globular proteins can be stabilized only by a tiny number of random sequences. The advantageous folds are few, they tolerate various primary structures, and therefore they can and ought to perform different functions. A connection between the inherent 'weak points' of protein folding patterns and positions of active sites are discussed.

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Year:  1993        PMID: 8513888     DOI: 10.1016/0014-5793(93)81407-q

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  18 in total

1.  Expanding protein universe and its origin from the biological Big Bang.

Authors:  Nikolay V Dokholyan; Boris Shakhnovich; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-16       Impact factor: 11.205

2.  Protein evolution within a structural space.

Authors:  Eric J Deeds; Nikolay V Dokholyan; Eugene I Shakhnovich
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

3.  Sequence specificity, statistical potentials, and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation in proteins.

Authors:  H Zhu; W Braun
Journal:  Protein Sci       Date:  1999-02       Impact factor: 6.725

4.  An asymmetric underlying rule in the assignment of codons: possible clue to a quick early evolution of the genetic code via successive binary choices.

Authors:  Marc Delarue
Journal:  RNA       Date:  2006-12-12       Impact factor: 4.942

5.  Domains in folding of model proteins.

Authors:  V I Abkevich; A M Gutin; E I Shakhnovich
Journal:  Protein Sci       Date:  1995-06       Impact factor: 6.725

6.  Why are some proteins structures so common?

Authors:  S Govindarajan; R A Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-16       Impact factor: 11.205

7.  Are protein folds atypical?

Authors:  H Li; C Tang; N S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

8.  Symmetry and the energy landscapes of biomolecules.

Authors:  P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

9.  How Many Protein Sequences Fold to a Given Structure? A Coevolutionary Analysis.

Authors:  Pengfei Tian; Robert B Best
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

10.  How the first biopolymers could have evolved.

Authors:  V I Abkevich; A M Gutin; E I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-23       Impact factor: 11.205

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