Literature DB >> 8692935

X-ray structure determination of a metastable state of carbonmonoxy myoglobin after photodissociation.

H Hartmann1, S Zinser, P Komninos, R T Schneider, G U Nienhaus, F Parak.   

Abstract

The x-ray structure of carbon monoxide (CO)-ligated myoglobin illuminated during data collection by a laser diode at the wavelength lambda = 690 nm has been determined to a resolution of 1.7 A at T = 36 K. For comparison, we also measured data sets of deoxymyoglobin and CO-ligated myoglobin. In the photon-induced structure the electron density associated with the CO ligand can be described by a tube extending from the iron into the heme pocket over more than 4 A. This density can be interpreted by two discrete positions of the CO molecule. One is close to the heme iron and can be identified to be bound CO. In the second, the CO is dissociated from the heme iron and lies on top of pyrrole ring C. At our experimental conditions the overall structure of myoglobin in the metastable state is close to the structure of a CO-ligated molecule. However, the iron has essentially relaxed into the position of deoxymyoglobin. We compare our results with those of Schlichting el al. [Schlichting, I., Berendzen, J., Phillips, G. N., Jr., & Sweet, R. M. (1994) Nature 317, 808-812], who worked with the myoglobin mutant (D122N) that crystallizes in the space group P6 and Teng et al. [Teng, T. Y., Srajer, V. & Moffat, K. (1994) Nat. Struct. Biol. 1, 701-705], who used native myoglobin crystals of the space group P2(1). Possible reasons for the structural differences are discussed.

Entities:  

Mesh:

Substances:

Year:  1996        PMID: 8692935      PMCID: PMC38926          DOI: 10.1073/pnas.93.14.7013

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Orientation of carbon monoxide and structure-function relationship in carbonmonoxymyoglobin.

Authors:  P Ormos; D Braunstein; H Frauenfelder; M K Hong; S L Lin; T B Sauke; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

2.  Low temperature X-ray investigation of structural distributions in myoglobin.

Authors:  F Parak; H Hartmann; K D Aumann; H Reuscher; G Rennekamp; H Bartunik; W Steigemann
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

3.  Kinetic, structural, and spectroscopic identification of geminate states of myoglobin: a ligand binding site on the reaction pathway.

Authors:  L Powers; B Chance; M Chance; B Campbell; J Friedman; S Khalid; C Kumar; A Naqui; K S Reddy; Y Zhou
Journal:  Biochemistry       Date:  1987-07-28       Impact factor: 3.162

4.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

5.  Ligand binding to heme proteins: II. Transitions in the heme pocket of myoglobin.

Authors:  J R Mourant; D P Braunstein; K Chu; H Frauenfelder; G U Nienhaus; P Ormos; R D Young
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

6.  Dynamics of ligand binding to myoglobin.

Authors:  R H Austin; K W Beeson; L Eisenstein; H Frauenfelder; I C Gunsalus
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

7.  CO bond angle changes in photolysis of carboxymyoglobin.

Authors:  L Powers; J L Sessler; G L Woolery; B Chance
Journal:  Biochemistry       Date:  1984-11-06       Impact factor: 3.162

8.  Stereochemistry of carbonylmetalloporphyrins. The structure of (pyridine)(carbonyl)(5, 10, 15, 20-tetraphenylprophinato)iron(II).

Authors:  S M Peng; J A Ibers
Journal:  J Am Chem Soc       Date:  1976-12-08       Impact factor: 15.419

9.  Rebinding and relaxation in the myoglobin pocket.

Authors:  A Ansari; J Berendzen; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; J B Johnson; P Ormos; T B Sauke
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

10.  Photolysis-induced structural changes in single crystals of carbonmonoxy myoglobin at 40 K.

Authors:  T Y Teng; V Srajer; K Moffat
Journal:  Nat Struct Biol       Date:  1994-10
View more
  42 in total

1.  Vibrational population relaxation of carbon monoxide in the heme pocket of photolyzed carbonmonoxy myoglobin: comparison of time-resolved mid-IR absorbance experiments and molecular dynamics simulations.

Authors:  D E Sagnella; J E Straub; T A Jackson; M Lim; P A Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Protein dynamics in an intermediate state of myoglobin: optical absorption, resonance Raman spectroscopy, and x-ray structure analysis.

Authors:  N Engler; A Ostermann; A Gassmann; D C Lamb; V E Prusakov; J Schott; R Schweitzer-Stenner; F G Parak
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

3.  Ligand migration in human myoglobin: steric effects of isoleucine 107(G8) on O(2) and CO binding.

Authors:  H Ishikawa; T Uchida; S Takahashi; K Ishimori; I Morishima
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

4.  The effect of ligand dynamics on heme electronic transition band III in myoglobin.

Authors:  Karin Nienhaus; Don C Lamb; Pengchi Deng; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

5.  Influence of static and dynamic disorder on the visible and infrared absorption spectra of carbonmonoxy horseradish peroxidase.

Authors:  A D Kaposi; J M Vanderkooi; W W Wright; J Fidy; S S Stavrov
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

6.  Kinetic evidence for three photolyzable taxonomic conformational substates in oxymyoglobin.

Authors:  Catherine Tetreau; Eugene Novikov; Martine Tourbez; Daniel Lavalette
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

7.  Cavities and packing defects in the structural dynamics of myoglobin.

Authors:  M Brunori; Q H Gibson
Journal:  EMBO Rep       Date:  2001-08       Impact factor: 8.807

8.  Theoretical investigation of infrared spectra and pocket dynamics of photodissociated carbonmonoxy myoglobin.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

9.  Competition with xenon elicits ligand migration and escape pathways in myoglobin.

Authors:  Catherine Tetreau; Yves Blouquit; Eugene Novikov; Eric Quiniou; Daniel Lavalette
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

10.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.