Literature DB >> 11806945

The effect of ligand dynamics on heme electronic transition band III in myoglobin.

Karin Nienhaus1, Don C Lamb, Pengchi Deng, G Ulrich Nienhaus.   

Abstract

Band III is a near-infrared electronic transition at ~13,000 cm(-1) in heme proteins that has been studied extensively as a marker of protein conformational relaxation after photodissociation of the heme-bound ligand. To examine the influence of the heme pocket structure and ligand dynamics on band III, we have studied carbon monoxide recombination in a variety of myoglobin mutants after photolysis at 3 K using Fourier transform infrared temperature-derivative spectroscopy with monitoring in three spectral ranges, (1) band III, the mid-infrared region of (2) the heme-bound CO, and (3) the photodissociated CO. Here we present data on mutant myoglobins V68F and L29W, which both exhibit pronounced ligand movements at low temperature. From spectral and kinetic analyses in the mid-infrared, a small number of photoproduct populations can be distinguished, differing in their distal heme pocket conformations and/or CO locations. We have decomposed band III into its individual photoproduct contributions. Each photoproduct state exhibits a different "kinetic hole-burning" (KHB) effect, a coupling of the activation enthalpy for rebinding to the position of band III. The analysis reveals that the heme pocket structure and the photodissociated CO markedly affect the band III transition. A strong kinetic hole-burning effect results only when the CO ligand resides in the docking site on top of the heme group. Migration of CO away from the heme group leads to an overall blue shift of band III. Consequently, band III can be used as a sensitive tool to study ligand dynamics after photodissociation in heme proteins.

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Year:  2002        PMID: 11806945      PMCID: PMC1301912          DOI: 10.1016/s0006-3495(02)75465-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

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Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

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Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

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  14 in total

1.  Theoretical investigation of infrared spectra and pocket dynamics of photodissociated carbonmonoxy myoglobin.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography.

Authors:  Dominique Bourgeois; Beatrice Vallone; Friedrich Schotte; Alessandro Arcovito; Adriana E Miele; Giuliano Sciara; Michael Wulff; Philip Anfinrud; Maurizio Brunori
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-07       Impact factor: 11.205

3.  Different relaxations in myoglobin after photolysis.

Authors:  Matteo Levantino; Antonio Cupane; László Zimányi; Pál Ormos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

4.  CO migration pathways in cytochrome P450cam studied by molecular dynamics simulations.

Authors:  Liliane Mouawad; Catherine Tetreau; Safwat Abdel-Azeim; David Perahia; Daniel Lavalette
Journal:  Protein Sci       Date:  2007-03-30       Impact factor: 6.725

5.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

6.  CO rebinding to protoheme: investigations of the proximal and distal contributions to the geminate rebinding barrier.

Authors:  Xiong Ye; Anchi Yu; Georgi Y Georgiev; Florin Gruia; Dan Ionascu; Wenxiang Cao; J Timothy Sage; Paul M Champion
Journal:  J Am Chem Soc       Date:  2005-04-27       Impact factor: 15.419

7.  Influence of distal residue B10 on CO dynamics in myoglobin and neuroglobin.

Authors:  Karin Nienhaus; G Ulrich Nienhaus
Journal:  J Biol Phys       Date:  2008-04-05       Impact factor: 1.365

8.  Myoglobin cavities provide interior ligand pathway.

Authors:  Martha M Teeter
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

9.  Ligand dynamics in a protein internal cavity.

Authors:  Jan M Kriegl; Karin Nienhaus; Pengchi Deng; Jochen Fuchs; G Ulrich Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-28       Impact factor: 11.205

10.  Infrared Study of Carbon Monoxide Migration among Internal Cavities of Myoglobin Mutant L29W.

Authors:  G U Nienhaus; K Nienhaus
Journal:  J Biol Phys       Date:  2002-06       Impact factor: 1.365

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