Literature DB >> 3428246

Low temperature X-ray investigation of structural distributions in myoglobin.

F Parak1, H Hartmann, K D Aumann, H Reuscher, G Rennekamp, H Bartunik, W Steigemann.   

Abstract

The results of X-ray structure analysis of metmyoglobin at 300 K, 185 K, 165 K, 115 K and 80 K are reported. The lattice vectors a and b decrease linearly with temperature while c shows non-linearity above 180 K, indicating some type of phase transition. Cooling does change the myoglobin structure but only within the structural distribution as determined by individual (chi 2)-values at room temperature. Two residues showed significant alternative positions for side-chains at higher temperatures while only one position is occupied at low temperatures. In the case of LEU 61 a jump between different positions of the side-chain reduces the potential barrier for the entrance of the O2 molecule to the heme pocket. The mean square displacements, (chi 2), of the individual residues decrease linearly with temperature in most cases, indicating a parabolic envelope for the potential responsible for motions. A separation of rotational and translational disorder of the entire molecule is discussed. Comparison with Mössbauer spectroscopy indicates that protein dynamics on a time scale faster than 10(-7) s is not simply a harmonic process. Extrapolation of the structural distributions to T = 0 K shows that a large zero point distribution of the myoglobin structure exists, thus proving that there is no absolute energy minimum for one well defined conformation.

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Year:  1987        PMID: 3428246     DOI: 10.1007/BF00577072

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  18 in total

1.  Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.

Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

2.  Crystallographic studies of the dynamic properties of lysozyme.

Authors:  P J Artymiuk; C C Blake; D E Grace; S J Oatley; D C Phillips; M J Sternberg
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

3.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

4.  Thermal expansion of a protein.

Authors:  H Frauenfelder; H Hartmann; M Karplus; I D Kuntz; J Kuriyan; F Parak; G A Petsko; D Ringe; R F Tilton; M L Connolly
Journal:  Biochemistry       Date:  1987-01-13       Impact factor: 3.162

5.  Structure of myoglobin refined at 2-0 A resolution. I. Crystallographic refinement of metmyoglobin from sperm whale.

Authors:  T Takano
Journal:  J Mol Biol       Date:  1977-03-05       Impact factor: 5.469

6.  Structure of myoglobin refined at 2-0 A resolution. II. Structure of deoxymyoglobin from sperm whale.

Authors:  T Takano
Journal:  J Mol Biol       Date:  1977-03-05       Impact factor: 5.469

7.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

8.  Dynamics of ligand binding to myoglobin.

Authors:  R H Austin; K W Beeson; L Eisenstein; H Frauenfelder; I C Gunsalus
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

9.  Structural disorder in proteins. A comparison of myoglobin and erythrocruorin.

Authors:  H Hartmann; W Steigemann; H Reuscher; F Parak
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

10.  Reaction of myoglobin with phenylhydrazine: a molecular doorstop.

Authors:  D Ringe; G A Petsko; D E Kerr; P R Ortiz de Montellano
Journal:  Biochemistry       Date:  1984-01-03       Impact factor: 3.162

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  17 in total

1.  Protein dynamics in an intermediate state of myoglobin: optical absorption, resonance Raman spectroscopy, and x-ray structure analysis.

Authors:  N Engler; A Ostermann; A Gassmann; D C Lamb; V E Prusakov; J Schott; R Schweitzer-Stenner; F G Parak
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  Stability diagram and unfolding of a modified cytochrome c: what happens in the transformation regime?

Authors:  Harald Lesch; Hans Stadlbauer; Josef Friedrich; Jane M Vanderkooi
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

3.  On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

Authors:  M M Teeter; A Yamano; B Stec; U Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

4.  Molecular probes: what is the range of their interaction with the environment?

Authors:  H Lesch; J Schlichter; J Friedrich; J M Vanderkooi
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

5.  X-ray structure determination of a metastable state of carbonmonoxy myoglobin after photodissociation.

Authors:  H Hartmann; S Zinser; P Komninos; R T Schneider; G U Nienhaus; F Parak
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

6.  Protein dynamics of a beta-sheet protein.

Authors:  Marius Schmidt; Klaus Achterhold; Valeriy Prusakov; Fritz G Parak
Journal:  Eur Biophys J       Date:  2009-03-07       Impact factor: 1.733

7.  A physical picture of protein dynamics and conformational changes.

Authors:  Fritz G Parak; Klaus Achterhold; Simonetta Croci; Marius Schmidt
Journal:  J Biol Phys       Date:  2008-08-27       Impact factor: 1.365

8.  Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering.

Authors:  S Cusack; W Doster
Journal:  Biophys J       Date:  1990-07       Impact factor: 4.033

9.  Mössbauer spectroscopy on nonequilibrium states of myoglobin: a study of r-t relaxation.

Authors:  V E Prusakov; J Steyer; F G Parak
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

10.  Fe-heme conformations in ferric myoglobin.

Authors:  S Della Longa; S Pin; R Cortès; A V Soldatov; B Alpert
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

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