Literature DB >> 8608449

A translational fidelity mutation in the universally conserved sarcin/ricin domain of 25S yeast ribosomal RNA.

R Liu1, S W Liebman.   

Abstract

Recent evidence suggests that ribosomal RNAs have functional roles in translation. We describe here a new ribosomal RNA mutation that causes translational suppression and antibiotic resistance in eukaryotic cells. Using random mutagenesis of the cloned ribosomal RNA gene and in vivo selection, we isolated a C --> U mutation in the universally conserved sarcin/ricin domain in Saccharomyces cerevisiae 25S ribosomal RNA. This mutation changes the putative CG pair, which closes the GAGA tetraloop in the sarcin/ricin domain, into a weaker UG pair without eliminating ribosomal sensitivity to ricin. We show that suppression of several UGA, UAG, and frameshift mutations is evident when a portion of the cellular ribosomal RNA contains the C --> U mutation. Cells that contain essentially all mutant ribosomal RNA grow only 10% slower than the wild-type, but show increased suppression as well as resistance to paramomycin, G418, and hygromycin, and sensitivity to cycloheximide. Our results provide genetic evidence for the participation of the sarcin/ricin loop in maintaining translational accuracy and are discussed in terms of a hypothesis that this ribosomal RNA region normally undergoes a conformational change during translation.

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Year:  1996        PMID: 8608449      PMCID: PMC1369368     

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  39 in total

1.  Single-base mutations at position 2661 of Escherichia coli 23S rRNA increase efficiency of translational proofreading.

Authors:  P Melançon; W E Tapprich; L Brakier-Gingras
Journal:  J Bacteriol       Date:  1992-12       Impact factor: 3.490

Review 2.  Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation.

Authors:  I G Wool; A Glück; Y Endo
Journal:  Trends Biochem Sci       Date:  1992-07       Impact factor: 13.807

3.  Mutations at U2555, a tRNA-protected base in 23S rRNA, affect translational fidelity.

Authors:  M O'Connor; A E Dahlberg
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

4.  The conformation of the sarcin/ricin loop from 28S ribosomal RNA.

Authors:  A A Szewczak; P B Moore; Y L Chang; I G Wool
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

5.  Separation of mutant and wild-type ribosomes based on differences in their anti Shine-Dalgarno sequence.

Authors:  R A Poot; M F Brink; C W Pleij; H A de Boer; J van Duin
Journal:  Nucleic Acids Res       Date:  1993-11-25       Impact factor: 16.971

6.  A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993.

Authors:  R R Gutell; M W Gray; M N Schnare
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

7.  The ribosomal RNA identity elements for ricin and for alpha-sarcin: mutations in the putative CG pair that closes a GAGA tetraloop.

Authors:  A Glück; Y Endo; I G Wool
Journal:  Nucleic Acids Res       Date:  1994-02-11       Impact factor: 16.971

8.  The yeast omnipotent suppressor SUP46 encodes a ribosomal protein which is a functional and structural homolog of the Escherichia coli S4 ram protein.

Authors:  A Vincent; S W Liebman
Journal:  Genetics       Date:  1992-10       Impact factor: 4.562

9.  Cryptopleurine resistance: genetic locus for a 40S ribosomal component in Saccharomyces cerevisiae.

Authors:  P Grant; L Sánchez; A Jiménez
Journal:  J Bacteriol       Date:  1974-12       Impact factor: 3.490

10.  Mutations in eukaryotic 18S ribosomal RNA affect translational fidelity and resistance to aminoglycoside antibiotics.

Authors:  Y O Chernoff; A Vincent; S W Liebman
Journal:  EMBO J       Date:  1994-02-15       Impact factor: 11.598

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  19 in total

1.  Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift.

Authors:  C L Burck; Y O Chernoff; R Liu; P J Farabaugh; S W Liebman
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  Chimeric rRNAs containing the GTPase centers of the developmentally regulated ribosomal rRNAs of Plasmodium falciparum are functionally distinct.

Authors:  I V Velichutina; M J Rogers; T F McCutchan; S W Liebman
Journal:  RNA       Date:  1998-05       Impact factor: 4.942

3.  Structure and stability of variants of the sarcin-ricin loop of 28S rRNA: NMR studies of the prokaryotic SRL and a functional mutant.

Authors:  K Seggerson; P B Moore
Journal:  RNA       Date:  1998-10       Impact factor: 4.942

4.  The influence of base identity and base pairing on the function of the alpha-sarcin loop of 23S rRNA.

Authors:  M O'Connor; A E Dahlberg
Journal:  Nucleic Acids Res       Date:  1996-07-15       Impact factor: 16.971

5.  Placement of the alpha-sarcin loop within the 50S subunit: evidence derived using a photolabile oligodeoxynucleotide probe.

Authors:  P Muralikrishna; R W Alexander; B S Cooperman
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

6.  Ski6p is a homolog of RNA-processing enzymes that affects translation of non-poly(A) mRNAs and 60S ribosomal subunit biogenesis.

Authors:  L Benard; K Carroll; R C Valle; R B Wickner
Journal:  Mol Cell Biol       Date:  1998-05       Impact factor: 4.272

7.  Alterations in ribosomal protein L19 that decrease the fidelity of translation.

Authors:  John VanNice; Steven T Gregory; Divya Kamath; Michael O'Connor
Journal:  Biochimie       Date:  2016-07-28       Impact factor: 4.079

Review 8.  Modulation of efficiency of translation termination in Saccharomyces cerevisiae.

Authors:  Anton A Nizhnikov; Kirill S Antonets; Sergey G Inge-Vechtomov; Irina L Derkatch
Journal:  Prion       Date:  2014-11-01       Impact factor: 3.931

9.  Poly(A)-Binding Protein Regulates the Efficiency of Translation Termination.

Authors:  Chan Wu; Bijoyita Roy; Feng He; Kevin Yan; Allan Jacobson
Journal:  Cell Rep       Date:  2020-11-17       Impact factor: 9.423

10.  Molecular dissection of translation termination mechanism identifies two new critical regions in eRF1.

Authors:  Isabelle Hatin; Celine Fabret; Jean-Pierre Rousset; Olivier Namy
Journal:  Nucleic Acids Res       Date:  2009-01-27       Impact factor: 16.971

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