Literature DB >> 27477481

Alterations in ribosomal protein L19 that decrease the fidelity of translation.

John VanNice1, Steven T Gregory2, Divya Kamath1, Michael O'Connor3.   

Abstract

Ribosomal protein L19 is an essential ribosomal protein and is a component of bridge B8, one of the protein-RNA bridges linking the large and small ribosomal subunits. Bridge B8 also contributes to the accuracy of translation by affecting GTPase activation by ribosome-bound aminoacyl tRNA-EF-Tu•GTP ternary complexes. Previous work has identified a limited number of accuracy-altering alterations in protein L19 of Salmonella enterica and Thermus thermophilus. Here, we have targeted the Escherichia coli rplS gene encoding L19 for mutagenesis and have screened for mutants with altered levels of miscoding. We have recovered 14 distinct L19 mutants, all of which promote increased stop codon readthrough, but do not have major effects on subunit association or cell growth. Examination of the E. coli 70S ribosome structure indicates that the amino acid substitutions cluster in three distinct regions of L19 and thereby potentially affect its interactions with L14 and 16S rRNA.
Copyright © 2016 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

Entities:  

Keywords:  Miscoding errors; Ribosomal protein L19; tRNA selection

Mesh:

Substances:

Year:  2016        PMID: 27477481      PMCID: PMC5859582          DOI: 10.1016/j.biochi.2016.07.015

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  29 in total

1.  Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome.

Authors:  T Pape; W Wintermeyer; M Rodnina
Journal:  EMBO J       Date:  1999-07-01       Impact factor: 11.598

2.  Selection of tRNA by the ribosome requires a transition from an open to a closed form.

Authors:  James M Ogle; Frank V Murphy; Michael J Tarry; V Ramakrishnan
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

Review 3.  Fidelity in protein synthesis.

Authors:  Luisa Cochella; Rachel Green
Journal:  Curr Biol       Date:  2005-07-26       Impact factor: 10.834

4.  Structural basis for mRNA and tRNA positioning on the ribosome.

Authors:  Veysel Berk; Wen Zhang; Raj D Pai; Jamie H D Cate; Jamie H Doudna Cate
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-12       Impact factor: 11.205

5.  Error-prone and error-restrictive mutations affecting ribosomal protein S12.

Authors:  Deepali Agarwal; Steven T Gregory; Michael O'Connor
Journal:  J Mol Biol       Date:  2011-05-07       Impact factor: 5.469

6.  Mutations at U2555, a tRNA-protected base in 23S rRNA, affect translational fidelity.

Authors:  M O'Connor; A E Dahlberg
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

7.  Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19.

Authors:  Sophie Maisnier-Patin; Wilhelm Paulander; Alexandra Pennhag; Dan I Andersson
Journal:  J Mol Biol       Date:  2006-11-15       Impact factor: 5.469

8.  Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome.

Authors:  T Pape; W Wintermeyer; M V Rodnina
Journal:  EMBO J       Date:  1998-12-15       Impact factor: 11.598

9.  A translational fidelity mutation in the universally conserved sarcin/ricin domain of 25S yeast ribosomal RNA.

Authors:  R Liu; S W Liebman
Journal:  RNA       Date:  1996-03       Impact factor: 4.942

10.  Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome.

Authors:  Qing Sun; Antón Vila-Sanjurjo; Michael O'Connor
Journal:  Nucleic Acids Res       Date:  2010-12-07       Impact factor: 16.971

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  1 in total

1.  Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast.

Authors:  Houman Moteshareie; Maryam Hajikarimlou; Alex Mulet Indrayanti; Daniel Burnside; Ana Paula Dias; Clara Lettl; Duale Ahmed; Katayoun Omidi; Tom Kazmirchuk; Nathalie Puchacz; Narges Zare; Sarah Takallou; Thet Naing; Raúl Bonne Hernández; William G Willmore; Mohan Babu; Bruce McKay; Bahram Samanfar; Martin Holcik; Ashkan Golshani
Journal:  PLoS One       Date:  2018-09-19       Impact factor: 3.240

  1 in total

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