Literature DB >> 25486049

Modulation of efficiency of translation termination in Saccharomyces cerevisiae.

Anton A Nizhnikov1, Kirill S Antonets, Sergey G Inge-Vechtomov, Irina L Derkatch.   

Abstract

Nonsense suppression is a readthrough of premature termination codons. It typically occurs either due to the recognition of stop codons by tRNAs with mutant anticodons, or due to a decrease in the fidelity of translation termination. In the latter case, suppressors usually promote the readthrough of different types of nonsense codons and are thus called omnipotent nonsense suppressors. Omnipotent nonsense suppressors were identified in yeast Saccharomyces cerevisiae in 1960s, and most of subsequent studies were performed in this model organism. Initially, omnipotent suppressors were localized by genetic analysis to different protein- and RNA-encoding genes, mostly the components of translational machinery. Later, nonsense suppression was found to be caused not only by genomic mutations, but also by epigenetic elements, prions. Prions are self-perpetuating protein conformations usually manifested by infectious protein aggregates. Modulation of translational accuracy by prions reflects changes in the activity of their structural proteins involved in different aspects of protein synthesis. Overall, nonsense suppression can be seen as a "phenotypic mirror" of events affecting the accuracy of the translational machine. However, the range of proteins participating in the modulation of translation termination fidelity is not fully elucidated. Recently, the list has been expanded significantly by findings that revealed a number of weak genetic and epigenetic nonsense suppressors, the effect of which can be detected only in specific genetic backgrounds. This review summarizes the data on the nonsense suppressors decreasing the fidelity of translation termination in S. cerevisiae, and discusses the functional significance of the modulation of translational accuracy.

Entities:  

Keywords:  G418, geneticin, aminoglycoside antibiotic; NMD, Nonsense-Mediated Decay; ORF, open reading frame; SNM, suppressor of nonsense mutation; SUP35; SUP45; amyloid; eEF, eukaryotic translation elongation factor; eRF, eukaryotic translation release factor; nonsense suppression; prion; ribosome; t-SNARE, (target membrane) soluble N-ethylmaleimide attachment protein receptor protein; translation; translation termination; yeast

Mesh:

Substances:

Year:  2014        PMID: 25486049      PMCID: PMC4601251          DOI: 10.4161/pri.29851

Source DB:  PubMed          Journal:  Prion        ISSN: 1933-6896            Impact factor:   3.931


  145 in total

1.  Evidence for a protein mutator in yeast: role of the Hsp70-related chaperone ssb in formation, stability, and toxicity of the [PSI] prion.

Authors:  Y O Chernoff; G P Newnam; J Kumar; K Allen; A D Zink
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

2.  Upf1 stimulates degradation of the product derived from aberrant messenger RNA containing a specific nonsense mutation by the proteasome.

Authors:  Kazushige Kuroha; Tsuyako Tatematsu; Toshifumi Inada
Journal:  EMBO Rep       Date:  2009-10-02       Impact factor: 8.807

3.  UGA: a third nonsense triplet in the genetic code.

Authors:  S Brenner; L Barnett; E R Katz; F H Crick
Journal:  Nature       Date:  1967-02-04       Impact factor: 49.962

4.  Gene products that promote mRNA turnover in Saccharomyces cerevisiae.

Authors:  P Leeds; J M Wood; B S Lee; M R Culbertson
Journal:  Mol Cell Biol       Date:  1992-05       Impact factor: 4.272

Review 5.  Biosynthesis of selenocysteine, the 21st amino acid in the genetic code, and a novel pathway for cysteine biosynthesis.

Authors:  Anton A Turanov; Xue-Ming Xu; Bradley A Carlson; Min-Hyuk Yoo; Vadim N Gladyshev; Dolph L Hatfield
Journal:  Adv Nutr       Date:  2011-03-10       Impact factor: 8.701

6.  [PSI+] Prion transmission barriers protect Saccharomyces cerevisiae from infection: intraspecies 'species barriers'.

Authors:  David A Bateman; Reed B Wickner
Journal:  Genetics       Date:  2011-11-17       Impact factor: 4.562

7.  [NSI (+)]: a novel non-Mendelian nonsense suppressor determinant in Saccharomyces cerevisiae.

Authors:  Alsu F Saifitdinova; Anton A Nizhnikov; Artem G Lada; Alexandr A Rubel; Zalina M Magomedova; Valentina V Ignatova; Sergey G Inge-Vechtomov; Alexey P Galkin
Journal:  Curr Genet       Date:  2010-07-29       Impact factor: 3.886

8.  An accuracy center in the ribosome conserved over 2 billion years.

Authors:  L E Alksne; R A Anthony; S W Liebman; J R Warner
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

9.  Physiological levels of normal tRNA(CAGGln) can effect partial suppression of amber mutations in the yeast Saccharomyces cerevisiae.

Authors:  W A Weiss; I Edelman; M R Culbertson; E C Friedberg
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

10.  Identification of stop codon readthrough genes in Saccharomyces cerevisiae.

Authors:  Olivier Namy; Guillemette Duchateau-Nguyen; Isabelle Hatin; Sylvie Hermann-Le Denmat; Michel Termier; Jean-Pierre Rousset
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

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  4 in total

Review 1.  Prions, amyloids, and RNA: Pieces of a puzzle.

Authors:  Anton A Nizhnikov; Kirill S Antonets; Stanislav A Bondarev; Sergey G Inge-Vechtomov; Irina L Derkatch
Journal:  Prion       Date:  2016-05-03       Impact factor: 3.931

Review 2.  Dual role of ribosome-associated chaperones in prion formation and propagation.

Authors:  Yury O Chernoff; Denis A Kiktev
Journal:  Curr Genet       Date:  2016-03-11       Impact factor: 3.886

3.  Feedback control of prion formation and propagation by the ribosome-associated chaperone complex.

Authors:  Denis A Kiktev; Mikhail M Melomed; Caroline D Lu; Gary P Newnam; Yury O Chernoff
Journal:  Mol Microbiol       Date:  2015-03-11       Impact factor: 3.501

Review 4.  Protein Co-Aggregation Related to Amyloids: Methods of Investigation, Diversity, and Classification.

Authors:  Stanislav A Bondarev; Kirill S Antonets; Andrey V Kajava; Anton A Nizhnikov; Galina A Zhouravleva
Journal:  Int J Mol Sci       Date:  2018-08-04       Impact factor: 5.923

  4 in total

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