Literature DB >> 7881271

(H)NCAHA and (H)CANNH experiments for the determination of the vicinal coupling constants related to the phi-torsion angle.

F Löhr1, H Rüterjans.   

Abstract

A set of three-dimensional triple-resonance experiments is described which provide 3J(HNHalpha), 3J(HNCO), 3J(HNCbeta) and 3J(HalphaCO) coupling constants. The pulse sequences generate E.COSY-like multiplet patterns and comprise a magnetization transfer from the amide proton to the alpha-proton or vice versa via the directly bound heteronuclei. For residues with the 1H(alph) spin resonating close to the H2O signal, a modified HNCA experiment can be employed to measure the vicinal 1H(N),1H(alpha) couplings. Ambiguities associated with the conversion of 3J(HNHalpha) values into phi-angle constraints for protein structure determination can be resolved with the knowledge of the heteronuclear 3J-couplings. In favourable cases, stereospecific assignments of glycine alpha-protons can be obtained by employing the experiments described here in combination with NOE data. The methods are applied to flavodoxin from Desulfovibrio vulgaris.

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Year:  1995        PMID: 7881271     DOI: 10.1007/bf00227467

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  Measurement of two-bond JCOH alpha coupling constants in proteins uniformly enriched with 13C.

Authors:  G W Vuister; A Bax
Journal:  J Biomol NMR       Date:  1992-07       Impact factor: 2.835

2.  Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins.

Authors:  D Marion; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1983-06-29       Impact factor: 3.575

3.  Accurate measurements of coupling constants from two-dimensional nuclear magnetic resonance spectra of proteins and determination of phi-angles.

Authors:  S Ludvigsen; K V Andersen; F M Poulsen
Journal:  J Mol Biol       Date:  1991-02-20       Impact factor: 5.469

4.  Assignment of the natural abundance 13C spectrum of proteins using 13C 1H-detected heteronuclear multiple-bond correlation NMR spectroscopy: structural information and stereospecific assignments from two- and three-bond carbon-hydrogen coupling constants.

Authors:  P E Hansen
Journal:  Biochemistry       Date:  1991-10-29       Impact factor: 3.162

5.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

6.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

7.  Homonuclear and heteronuclear NMR studies of oxidized Desulfovibrio vulgaris flavodoxin. Sequential assignments and identification of secondary structure elements.

Authors:  M A Knauf; F Löhr; G P Curley; P O'Farrell; S G Mayhew; F Müller; H Rüterjans
Journal:  Eur J Biochem       Date:  1993-04-01

8.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

9.  Precise vicinal coupling constants 3JHN alpha in proteins from nonlinear fits of J-modulated [15N,1H]-COSY experiments.

Authors:  M Billeter; D Neri; G Otting; Y Q Qian; K Wüthrich
Journal:  J Biomol NMR       Date:  1992-05       Impact factor: 2.835

10.  HNCCH-TOCSY, a triple resonance experiment for the correlation of backbone 13C alpha and 15N resonances with aliphatic side-chain proton resonances and for measuring vicinal 13CO,1H beta coupling constants in proteins.

Authors:  R Weisemann; F Löhr; H Rüterjans
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

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  11 in total

1.  Intensity modulated HSQC and HMQC: two simple methods to measure 3J(HNH)alpha in proteins.

Authors:  P Permi; I Kilpeläinen; A Annila; S Heikkinen
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

2.  Self-consistent 3J coupling analysis for the joint calibration of Karplus coefficients and evaluation of torsion angles.

Authors:  J M Schmidt; M Blümel; F Löhr; H Rüterjans
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

3.  Hydrophobic side-chain size is a determinant of the three-dimensional structure of the p53 oligomerization domain.

Authors:  M McCoy; E S Stavridi; J L Waterman; A M Wieczorek; S J Opella; T D Halazonetis
Journal:  EMBO J       Date:  1997-10-15       Impact factor: 11.598

4.  Measurement of homonuclear three-bond J(H(N)Halpha) coupling constants in unlabeled peptides complexed with labeled proteins: application to a decapeptide inhibitor bound to the proteinase domain of the NS3 protein of hepatitis C virus (HCV).

Authors:  D O Cicero; G Barbato; U Koch; P Ingallinella; E Bianchi; S Sambucini; P Neddermann; R De Francesco; A Pessi; R Bazzo
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

5.  A structurally dynamic N-terminal helix is a key functional determinant in staphylococcal complement inhibitor (SCIN) proteins.

Authors:  Brandon L Garcia; Brady J Summers; Kasra X Ramyar; Apostolia Tzekou; Zhuoer Lin; Daniel Ricklin; John D Lambris; John H Laity; Brian V Geisbrecht
Journal:  J Biol Chem       Date:  2012-12-11       Impact factor: 5.157

6.  Alternative E.COSY techniques for the measurement of 3J(C (i) (') (-1),C (i) (beta) ) and (3) J(H (i) (N) ,C (i) (beta) ) coupling constants in proteins.

Authors:  F Löhr; H Rüterjans
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Heteronuclear relayed E.COSY revisited: determination of 3J(H(alpha),C(gamma)) couplings in Asx and aromatic residues in proteins.

Authors:  F Löhr; C Pérez; R Köhler; H Rüterjans; J M Schmidt
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

8.  Determination of (3)J(H (infi) (supN) ,C (infi) (sup') ) coupling constants in proteins with the C'-FIDS method.

Authors:  A Rexroth; S Szalma; R Weisemann; W Bermel; H Schwalbe; C Griesinger
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Rapid measurement of scalar three-bond 1HN-1H alpha spin coupling constants in 15N-labelled proteins.

Authors:  H Ponstingl; G Otting
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

10.  Heteronuclear relayed E.COSY applied to the determination of accurate 3J(HN,C') and 3J(H beta,C') coupling constants in desulfovibrio vulgaris flavodoxin.

Authors:  J M Schmidt; F Löhr; H Rüterjans
Journal:  J Biomol NMR       Date:  1996-03       Impact factor: 2.835

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