Literature DB >> 20700819

Alternative E.COSY techniques for the measurement of 3J(C (i) (') (-1),C (i) (beta) ) and (3) J(H (i) (N) ,C (i) (beta) ) coupling constants in proteins.

F Löhr1, H Rüterjans.   

Abstract

Experiments are proposed for the measurement of the vicinal coupling constants between beta-carbons and either amide protons of the same or carbonyl carbons of the preceding amino acid residue in 13C/15N-labeled proteins. Both couplings depend on the backbone torsional angle phi. The three-dimensional pulse sequences give rise to E.COSY-like multiplet patterns in which heteronuclear one-bond couplings separate the doublet components corresponding to the two spin states of the respective passive nuclei. Thus, in contrast to previously published pulse schemes which employed the homonuclear 1J(Calpha,Cbeta) interaction, difficulties due to overlap of spectral regions of active and passive spins are avoided. A major drawback of the novel sequences is their limited sensitivity. Nevertheless, application to Desulfovibrio vulgaris flavodoxin yielded coupling constants for more than 85% of all non-glycine and non-proline residues.

Entities:  

Year:  1999        PMID: 20700819     DOI: 10.1023/A:1008378719908

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  NMR investigation of the solution conformation of oxidized flavodoxin from Desulfovibrio vulgaris. Determination of the tertiary structure and detection of protein-bound water molecules.

Authors:  M A Knauf; F Löhr; M Blümel; S G Mayhew; H Rüterjans
Journal:  Eur J Biochem       Date:  1996-06-01

2.  Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins.

Authors:  A Meissner; J O Duus; O W Sørensen
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

3.  Use of selective C alpha pulses for improvement of HN(CA)CO-D and HN(COCA)NH-D experiments.

Authors:  H Matsuo; E Kupce; H Li; G Wagner
Journal:  J Magn Reson B       Date:  1996-05

4.  (H)NCAHA and (H)CANNH experiments for the determination of the vicinal coupling constants related to the phi-torsion angle.

Authors:  F Löhr; H Rüterjans
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

5.  Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins.

Authors:  D Marion; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1983-06-29       Impact factor: 3.575

6.  Vicinal coupling constants and protein dynamics.

Authors:  J C Hoch; C M Dobson; M Karplus
Journal:  Biochemistry       Date:  1985-07-16       Impact factor: 3.162

7.  Comparison of the crystal structures of a flavodoxin in its three oxidation states at cryogenic temperatures.

Authors:  W Watt; A Tulinsky; R P Swenson; K D Watenpaugh
Journal:  J Mol Biol       Date:  1991-03-05       Impact factor: 5.469

8.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

9.  HMQC and HSQC experiments with water flip-back optimized for large proteins.

Authors:  P Andersson; B Gsell; B Wipf; H Senn; G Otting
Journal:  J Biomol NMR       Date:  1998-04       Impact factor: 2.835

10.  Measurement of three-bond, 13C'-13C beta J couplings in human ubiquitin by a triple resonance, E. COSY-type NMR technique.

Authors:  J S Hu; A Bax
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

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  2 in total

1.  Self-consistent 3J coupling analysis for the joint calibration of Karplus coefficients and evaluation of torsion angles.

Authors:  J M Schmidt; M Blümel; F Löhr; H Rüterjans
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  Heteronuclear relayed E.COSY revisited: determination of 3J(H(alpha),C(gamma)) couplings in Asx and aromatic residues in proteins.

Authors:  F Löhr; C Pérez; R Köhler; H Rüterjans; J M Schmidt
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

  2 in total

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