Literature DB >> 7510527

Correction for missed events based on a realistic model of a detector.

S Draber1, R Schultze.   

Abstract

Quantitative patch-clamp analysis based on dwell-time histograms has to deal with the problem of missed events. The correction of the evaluated time constants has to take into account the characteristics of the detector used for the reconstruction of the time series. In previous approaches a simple model of the detector has been used, which is based on the assumption that all events shorter than the temporal resolution tres were missed, irrespective of the preceding events. Rather than the standard assumption of a fixed dead time, we introduce a more realistic model of a detector by a continuous-time version of the Hinkley detector. The combined state of the channel and the detector obeys a Markov model, which is governed by a Fokker-Planck-Kolmogorov partial differential equation. The steady-state solution leads to the determination of the apparent time constants tau o and tau c depending on the true rate constants koc and kco and the temporal resolution tres of the detector. Simulations with different kinds of detectors, including the Bessel filter with half-amplitude threshold detection, are performed. They show that our new equation predicts the dependence of tau c and tau o on koc, kco, and tres better than the standard equation used until now.

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Year:  1994        PMID: 7510527      PMCID: PMC1275679          DOI: 10.1016/S0006-3495(94)80756-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Yet another approach to the dwell-time omission problem of single-channel analysis.

Authors:  S C Crouzy; F J Sigworth
Journal:  Biophys J       Date:  1990-09       Impact factor: 4.033

2.  A general solution to the time interval omission problem applied to single channel analysis.

Authors:  B Roux; R Sauvé
Journal:  Biophys J       Date:  1985-07       Impact factor: 4.033

3.  Correcting single channel data for missed events.

Authors:  A L Blatz; K L Magleby
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

4.  Estimation of single channel kinetic parameters from data subject to limited time resolution.

Authors:  R K Milne; G F Yeo; B W Madsen; R O Edeson
Journal:  Biophys J       Date:  1989-04       Impact factor: 4.033

5.  Equivalence of aggregated Markov models of ion-channel gating.

Authors:  P Kienker
Journal:  Proc R Soc Lond B Biol Sci       Date:  1989-04-22

6.  Statistical inference from single channel records: two-state Markov model with limited time resolution.

Authors:  G F Yeo; R K Milne; R O Edeson; B W Madsen
Journal:  Proc R Soc Lond B Biol Sci       Date:  1988-10-22

7.  Open channel noise. IV. Estimation of rapid kinetics of formamide block in gramicidin A channels.

Authors:  S H Heinemann; F J Sigworth
Journal:  Biophys J       Date:  1988-10       Impact factor: 4.033

8.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

9.  Patch-clamp studies on the anomalous mole fraction effect of the K+ channel in cytoplasmic droplets of Nitella: an attempt to distinguish between a multi-ion single-file pore and an enzyme kinetic model with lazy state.

Authors:  S Draber; R Schultze; U P Hansen
Journal:  J Membr Biol       Date:  1991-08       Impact factor: 1.843

10.  Ionic permeation and blockade in Ca2+-activated K+ channels of bovine chromaffin cells.

Authors:  G Yellen
Journal:  J Gen Physiol       Date:  1984-08       Impact factor: 4.086

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  11 in total

1.  The anomalous mole fraction effect in Chara: gating at the edge of temporal resolution.

Authors:  A Farokhi; M Keunecke; U P Hansen
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

2.  Distributions-per-level: a means of testing level detectors and models of patch-clamp data.

Authors:  I Schröder; T Huth; V Suitchmezian; J Jarosik; S Schnell; U P Hansen
Journal:  J Membr Biol       Date:  2004-01-01       Impact factor: 1.843

3.  A subsequent fit of time series and amplitude histogram of patch-clamp records reveals rate constants up to 1 per microsecond.

Authors:  I Schröder; P Harlfinger; T Huth; U P Hansen
Journal:  J Membr Biol       Date:  2005-01       Impact factor: 1.843

4.  The power of two-dimensional dwell-time analysis for model discrimination, temporal resolution, multichannel analysis and level detection.

Authors:  Tobias Huth; Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2007-06-06       Impact factor: 1.843

5.  Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  Eur Biophys J       Date:  2009-07-21       Impact factor: 1.733

6.  Estimation of kinetic rate constants from multi-channel recordings by a direct fit of the time series.

Authors:  A Albertsen; U P Hansen
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

7.  Detection of jumps in single-channel data containing subconductance levels.

Authors:  S Draber; R Schultze
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

8.  Fluctuation analysis of motor protein movement and single enzyme kinetics.

Authors:  K Svoboda; P P Mitra; S M Block
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-06       Impact factor: 11.205

9.  Fast single-channel measurements resolve the blocking effect of Cs+ on the K+ channel.

Authors:  S Draber; U P Hansen
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

10.  Strengths and limits of Beta distributions as a means of reconstructing the true single-channel current in patch clamp time series with fast gating.

Authors:  I Schroeder; U-P Hansen
Journal:  J Membr Biol       Date:  2006-08-14       Impact factor: 2.426

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