Literature DB >> 2423151

Correcting single channel data for missed events.

A L Blatz, K L Magleby.   

Abstract

Interpretation of currents recorded from single ion channels in cellular membranes or lipid bilayers is complicated by the necessarily limited time resolution of the recording and detection systems. All intervals less than a certain duration, depending on the frequency response of the system, are not detected. Such missed events produce increases in the durations of observed open and shut intervals. In order to obtain the true kinetic scheme and rate constants underlying the observed activity, it is necessary to take into account missed events. We develop methods to correct for missed events for models with two or more states, including models with multiple open and shut states, compound states, and loops. Our methods can be used in a forward direction to predict observed distributions of open and shut intervals for a given kinetic scheme and time resolution. They can also be used in a backwards direction with iterative methods to determine rate constants consistent with the observed distributions. While a given kinetic scheme with rate constants predicts unique observed distributions of open and shut intervals, rate constants determined from observed distributions are not necessarily unique. Using these correction methods, we examine the effects of missed events for a five-state model consistent with some properties of large conductance Ca-activated K channels.

Entities:  

Mesh:

Substances:

Year:  1986        PMID: 2423151      PMCID: PMC1329677          DOI: 10.1016/S0006-3495(86)83725-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

1.  Open channel noise. I. Noise in acetylcholine receptor currents suggests conformational fluctuations.

Authors:  F J Sigworth
Journal:  Biophys J       Date:  1985-05       Impact factor: 4.033

2.  Ionic channels with conformational substates.

Authors:  P Läuger
Journal:  Biophys J       Date:  1985-05       Impact factor: 4.033

3.  A general solution to the time interval omission problem applied to single channel analysis.

Authors:  B Roux; R Sauvé
Journal:  Biophys J       Date:  1985-07       Impact factor: 4.033

4.  Kinetic analysis of channel gating. Application to the cholinergic receptor channel and the chloride channel from Torpedo californica.

Authors:  P Labarca; J A Rice; D R Fredkin; M Montal
Journal:  Biophys J       Date:  1985-04       Impact factor: 4.033

5.  Some unexpected consequences of a simple physical mechanism for voltage-dependent gating in biological membranes.

Authors:  A Finkelstein; C S Peskin
Journal:  Biophys J       Date:  1984-11       Impact factor: 4.033

6.  The charge carried by single-channel currents of rat cultured muscle cells in the presence of local anaesthetics.

Authors:  E Neher
Journal:  J Physiol       Date:  1983-06       Impact factor: 5.182

7.  Estimating kinetic constants from single channel data.

Authors:  R Horn; K Lange
Journal:  Biophys J       Date:  1983-08       Impact factor: 4.033

Review 8.  Integral membrane channels: studies in model membranes.

Authors:  C Miller
Journal:  Physiol Rev       Date:  1983-10       Impact factor: 37.312

9.  Calcium dependence of open and shut interval distributions from calcium-activated potassium channels in cultured rat muscle.

Authors:  K L Magleby; B S Pallotta
Journal:  J Physiol       Date:  1983-11       Impact factor: 5.182

10.  Gating kinetics of Ca2+-activated K+ channels from rat muscle incorporated into planar lipid bilayers. Evidence for two voltage-dependent Ca2+ binding reactions.

Authors:  E Moczydlowski; R Latorre
Journal:  J Gen Physiol       Date:  1983-10       Impact factor: 4.086

View more
  120 in total

1.  Complex voltage-dependent behavior of single unliganded calcium-sensitive potassium channels.

Authors:  G Talukder; R W Aldrich
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  The kinetic and physical basis of K(ATP) channel gating: toward a unified molecular understanding.

Authors:  D Enkvetchakul; G Loussouarn; E Makhina; S L Shyng; C G Nichols
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

3.  The effects of non-identifiability on testing for detailed balance in aggregated Markov models for ion-channel gating.

Authors:  M Wagner; J Timmer
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

4.  Two-dimensional kinetic analysis suggests nonsequential gating of mechanosensitive channels in Xenopus oocytes.

Authors:  Z Gil; K L Magleby; S D Silberberg
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

5.  Voltage-dependent gating mechanism for single fast chloride channels from rat skeletal muscle.

Authors:  D S Weiss; K L Magleby
Journal:  J Physiol       Date:  1992       Impact factor: 5.182

6.  Steady-state kinetics of solitary batrachotoxin-treated sodium channels. Kinetics on a bounded continuum of polymer conformations.

Authors:  K A Rubinson
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

7.  Model-based fitting of single-channel dwell-time distributions.

Authors:  Feng Qin; Ling Li
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

8.  Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling.

Authors:  Feng Qin
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

9.  Ion effects on gating of the Ca(2+)-activated K+ channel correlate with occupancy of the pore.

Authors:  S D Demo; G Yellen
Journal:  Biophys J       Date:  1992-03       Impact factor: 4.033

10.  Short isoforms of the cold receptor TRPM8 inhibit channel gating by mimicking heat action rather than chemical inhibitors.

Authors:  José A Fernández; Roman Skryma; Gabriel Bidaux; Karl L Magleby; C Norman Scholfield; J Graham McGeown; Natalia Prevarskaya; Alexander V Zholos
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.