Literature DB >> 1698473

Yet another approach to the dwell-time omission problem of single-channel analysis.

S C Crouzy1, F J Sigworth.   

Abstract

Distortion of the open-time or closed-time distributions of single channel currents, due to limited time resolution of the recording system, has been addressed by many authors. The calculation of the modified distributions generally involves the numerical inversion of a Laplace transform and is difficult to apply in fitting multistate kinetic schemes to data. Our approach is to introduce "virtual states" into the kinetic scheme, as suggested by Blatz and Magleby (1986. Biophys. J. 49:967-980) to account for missed events. To simplify the assignment of rate constants in multistate schemes we make use of Kienker's (1989. Proc. R. Soc. Lond. 236:296-309) theory to first transform schemes to uncoupled form. Our approach provides a good approximation to the exact solution, while allowing the observable dwell-time distributions, and also the second-order probability density functions, to be computed by standard matrix techniques.

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Year:  1990        PMID: 1698473      PMCID: PMC1281014          DOI: 10.1016/S0006-3495(90)82416-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

1.  A general solution to the time interval omission problem applied to single channel analysis.

Authors:  B Roux; R Sauvé
Journal:  Biophys J       Date:  1985-07       Impact factor: 4.033

2.  Correcting single channel data for missed events.

Authors:  A L Blatz; K L Magleby
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

3.  Stochastic modelling of a single ion channel: an alternating renewal approach with application to limited time resolution.

Authors:  R K Milne; G F Yeo; R O Edeson; B W Madsen
Journal:  Proc R Soc Lond B Biol Sci       Date:  1988-04-22

4.  Statistical analysis of channel current from a membrane patch. I. Some stochastic properties of ion channels or molecular systems in equilibrium.

Authors:  S Kijima; H Kijima
Journal:  J Theor Biol       Date:  1987-10-21       Impact factor: 2.691

5.  Equivalence of aggregated Markov models of ion-channel gating.

Authors:  P Kienker
Journal:  Proc R Soc Lond B Biol Sci       Date:  1989-04-22

6.  Statistical inference from single channel records: two-state Markov model with limited time resolution.

Authors:  G F Yeo; R K Milne; R O Edeson; B W Madsen
Journal:  Proc R Soc Lond B Biol Sci       Date:  1988-10-22

7.  Data transformations for improved display and fitting of single-channel dwell time histograms.

Authors:  F J Sigworth; S M Sine
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

8.  Theory of the kinetic analysis of patch-clamp data.

Authors:  R J Bauer; B F Bowman; J L Kenyon
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

9.  The charge carried by single-channel currents of rat cultured muscle cells in the presence of local anaesthetics.

Authors:  E Neher
Journal:  J Physiol       Date:  1983-06       Impact factor: 5.182

10.  Calcium dependence of open and shut interval distributions from calcium-activated potassium channels in cultured rat muscle.

Authors:  K L Magleby; B S Pallotta
Journal:  J Physiol       Date:  1983-11       Impact factor: 5.182

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  40 in total

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Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

2.  Two-dimensional kinetic analysis suggests nonsequential gating of mechanosensitive channels in Xenopus oocytes.

Authors:  Z Gil; K L Magleby; S D Silberberg
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Ca2+-dependent gating mechanisms for dSlo, a large-conductance Ca2+-activated K+ (BK) channel.

Authors:  B L Moss; S D Silberberg; C M Nimigean; K L Magleby
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Journal:  J Physiol       Date:  2003-01-24       Impact factor: 5.182

5.  Model-based fitting of single-channel dwell-time distributions.

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Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

6.  Origins of concentration dependence of waiting times for single-molecule fluorescence binding.

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Journal:  J Chem Phys       Date:  2012-06-28       Impact factor: 3.488

Review 7.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Authors:  Indra Schroeder
Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

Review 8.  Activation of skeletal muscle nicotinic acetylcholine receptors.

Authors:  C J Lingle; D Maconochie; J H Steinbach
Journal:  J Membr Biol       Date:  1992-03       Impact factor: 1.843

9.  Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences.

Authors:  Lorin S Milescu; Ahmet Yildiz; Paul R Selvin; Frederick Sachs
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

10.  Extracting dwell time sequences from processive molecular motor data.

Authors:  Lorin S Milescu; Ahmet Yildiz; Paul R Selvin; Frederick Sachs
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

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