Literature DB >> 19626320

Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

Indra Schroeder1, Ulf-Peter Hansen.   

Abstract

Fast gating of ion channels with rate constants higher than the corner frequency of the recording set-up can be evaluated by fitting so-called beta distributions to measured amplitude histograms. Up to now, this was preferentially done for O-C Markov sub-models with one open and one closed state. Here, a fit of the amplitude histograms from MaxiK (BK) single-channel records was achieved with a five-state model with two open and three closed states including three open-close transitions with rate constants higher than the corner frequency (20 kHz) of the inevitable low-pass filter of the recording system. The numerical values of the rate constants of these transitions enabled a nearly one-to-one relationship between typical regions of the histograms and the reactions in the Markov model. These characteristic features are the width of the peak at the apparent single-channel current, the side slopes at the open and at the closed peak, and the depth of the valley between the two peaks. However, the simplex routine alone was incapable of finding the solution but could do so if guided by hand along a suggested strategy.

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Year:  2009        PMID: 19626320     DOI: 10.1007/s00249-009-0515-0

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  51 in total

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Authors:  G Yellen
Journal:  Nat Struct Biol       Date:  2001-12

2.  Applying hidden Markov models to the analysis of single ion channel activity.

Authors:  L Venkataramanan; F J Sigworth
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

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Authors:  K L Magleby; L Song
Journal:  Proc Biol Sci       Date:  1992-08-22       Impact factor: 5.349

4.  A gate in the selectivity filter of potassium channels.

Authors:  Simon Bernèche; Benoît Roux
Journal:  Structure       Date:  2005-04       Impact factor: 5.006

5.  Yet another approach to the dwell-time omission problem of single-channel analysis.

Authors:  S C Crouzy; F J Sigworth
Journal:  Biophys J       Date:  1990-09       Impact factor: 4.033

6.  Gating of the mechanosensitive channel protein MscL: the interplay of membrane and protein.

Authors:  Jonggu Jeon; Gregory A Voth
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

7.  Local conformational dynamics in alpha-helices measured by fast triplet transfer.

Authors:  Beat Fierz; Andreas Reiner; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-08       Impact factor: 11.205

8.  Selectivity changes during activation of mutant Shaker potassium channels.

Authors:  J Zheng; F J Sigworth
Journal:  J Gen Physiol       Date:  1997-08       Impact factor: 4.086

9.  Estimation of single channel kinetic parameters from data subject to limited time resolution.

Authors:  R K Milne; G F Yeo; B W Madsen; R O Edeson
Journal:  Biophys J       Date:  1989-04       Impact factor: 4.033

10.  Fast single-channel measurements resolve the blocking effect of Cs+ on the K+ channel.

Authors:  S Draber; U P Hansen
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

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  5 in total

Review 1.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Authors:  Indra Schroeder
Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

2.  Modulation of enrofloxacin binding in OmpF by Mg2+ as revealed by the analysis of fast flickering single-porin current.

Authors:  Annemarie Brauser; Indra Schroeder; Thomas Gutsmann; Cristian Cosentino; Anna Moroni; Ulf-Peter Hansen; Mathias Winterhalter
Journal:  J Gen Physiol       Date:  2012-06-11       Impact factor: 4.086

3.  Lack of negative slope in I-V plots for BK channels at positive potentials in the absence of intracellular blockers.

Authors:  Yanyan Geng; Xiaoyu Wang; Karl L Magleby
Journal:  J Gen Physiol       Date:  2013-04       Impact factor: 4.086

4.  Ca2+ block and flickering both contribute to the negative slope of the IV curve in BK channels.

Authors:  Indra Schroeder; Gerhard Thiel; Ulf-Peter Hansen
Journal:  J Gen Physiol       Date:  2013-04       Impact factor: 4.086

5.  Extended beta distributions open the access to fast gating in bilayer experiments-assigning the voltage-dependent gating to the selectivity filter.

Authors:  Oliver Rauh; Ulf-Peter Hansen; Sebastian Mach; Andreas J W Hartel; Kenneth L Shepard; Gerhard Thiel; Indra Schroeder
Journal:  FEBS Lett       Date:  2017-11-19       Impact factor: 4.124

  5 in total

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