Literature DB >> 2470426

Estimation of single channel kinetic parameters from data subject to limited time resolution.

R K Milne1, G F Yeo, B W Madsen, R O Edeson.   

Abstract

The limited responsiveness of single-channel recording systems results in some brief events not being detected, and if this is ignored parameter estimation from the observed data will be biased. Statistical methods of correcting for this limited time resolution in a two-state Markov model have been proposed by Neher (1983. J. Physiol. (Lond.). 339:663-678) and by Colquhoun and Sigworth (1983. Single Channel Recording. 191-263). However, a numerical study by Blatz and Magleby (1986. Biophys. J. 49:967-980) indicated differences of 3-40% in the corrected values given by the two techniques. Here we explain why Neher's method produces biased results and the Colquhoun and Sigworth approach, which is no more difficult, provides reasonably accurate estimates.

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Year:  1989        PMID: 2470426      PMCID: PMC1330550          DOI: 10.1016/S0006-3495(89)82865-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  10 in total

1.  Effect of limited interval resolution on single channel measurements with application to Ca channels.

Authors:  D L Wilson; A M Brown
Journal:  IEEE Trans Biomed Eng       Date:  1985-10       Impact factor: 4.538

2.  A general solution to the time interval omission problem applied to single channel analysis.

Authors:  B Roux; R Sauvé
Journal:  Biophys J       Date:  1985-07       Impact factor: 4.033

3.  Correcting single channel data for missed events.

Authors:  A L Blatz; K L Magleby
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

4.  Temporal clustering of ion channel openings incorporating time interval omission.

Authors:  F Ball; M Sansom
Journal:  IMA J Math Appl Med Biol       Date:  1987

5.  Stochastic modelling of a single ion channel: an alternating renewal approach with application to limited time resolution.

Authors:  R K Milne; G F Yeo; R O Edeson; B W Madsen
Journal:  Proc R Soc Lond B Biol Sci       Date:  1988-04-22

6.  Statistical inference from single channel records: two-state Markov model with limited time resolution.

Authors:  G F Yeo; R K Milne; R O Edeson; B W Madsen
Journal:  Proc R Soc Lond B Biol Sci       Date:  1988-10-22

7.  Data transformations for improved display and fitting of single-channel dwell time histograms.

Authors:  F J Sigworth; S M Sine
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

8.  Direct measurement of proton transfer rates to a group controlling the dihydropyridine-sensitive Ca2+ channel.

Authors:  B Prod'hom; D Pietrobon; P Hess
Journal:  Nature       Date:  1987 Sep 17-23       Impact factor: 49.962

9.  Single-channel electrophysiology: use of the patch clamp.

Authors:  F Sachs; A Auerbach
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

10.  The charge carried by single-channel currents of rat cultured muscle cells in the presence of local anaesthetics.

Authors:  E Neher
Journal:  J Physiol       Date:  1983-06       Impact factor: 5.182

  10 in total
  13 in total

1.  Steady-state kinetics of solitary batrachotoxin-treated sodium channels. Kinetics on a bounded continuum of polymer conformations.

Authors:  K A Rubinson
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

2.  Hidden Markov analysis of improved bandwidth mechanosensitive ion channel data.

Authors:  Ibrahim M Almanjahie; R Nazim Khan; Robin K Milne; Takeshi Nomura; Boris Martinac
Journal:  Eur Biophys J       Date:  2015-08-02       Impact factor: 1.733

3.  Estimating kinetic parameters for single channels with simulation. A general method that resolves the missed event problem and accounts for noise.

Authors:  K L Magleby; D S Weiss
Journal:  Biophys J       Date:  1990-12       Impact factor: 4.033

4.  Estimation of ion channel kinetics from fluctuations of macroscopic currents.

Authors:  Luciano Moffatt
Journal:  Biophys J       Date:  2007-04-06       Impact factor: 4.033

5.  Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  Eur Biophys J       Date:  2009-07-21       Impact factor: 1.733

6.  Single ion channel models incorporating aggregation and time interval omission.

Authors:  F G Ball; G F Yeo; R K Milne; R O Edeson; B W Madsen; M S Sansom
Journal:  Biophys J       Date:  1993-02       Impact factor: 4.033

7.  Correction for missed events based on a realistic model of a detector.

Authors:  S Draber; R Schultze
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

8.  Cooperative behavior of K+ channels in the tonoplast of Chara corallina.

Authors:  S Draber; R Schultze; U P Hansen
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

9.  Fast single-channel measurements resolve the blocking effect of Cs+ on the K+ channel.

Authors:  S Draber; U P Hansen
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

10.  Strengths and limits of Beta distributions as a means of reconstructing the true single-channel current in patch clamp time series with fast gating.

Authors:  I Schroeder; U-P Hansen
Journal:  J Membr Biol       Date:  2006-08-14       Impact factor: 2.426

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