Literature DB >> 7991536

Fluctuation analysis of motor protein movement and single enzyme kinetics.

K Svoboda1, P P Mitra, S M Block.   

Abstract

We studied fluctuations in the displacement of silica beads driven by single molecules of the motor protein kinesin, moving under low mechanical loads at saturating ATP concentrations. The variance in position was significantly smaller than expected for the case of stepwise movement along a regular lattice of positions with exponentially distributed intervals. The small variance suggests that two or more sequential processes with comparable reaction rates dominate the biochemical cycle. The low value is inconsistent with certain recently proposed thermal ratchet models for motor movement as well as with scenarios where the hydrolysis of a single ATP molecule leads to a cluster of several steps. Fluctuation analysis is a potential powerful tool for studying kinetic behavior whenever the output of a single enzyme can be monitored.

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Year:  1994        PMID: 7991536      PMCID: PMC45319          DOI: 10.1073/pnas.91.25.11782

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Fluctuation driven ratchets: Molecular motors.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-03-14       Impact factor: 9.161

2.  Characterization of alpha 2 beta 2 and alpha 2 forms of kinesin.

Authors:  D D Hackney; J D Levitt; D D Wagner
Journal:  Biochem Biophys Res Commun       Date:  1991-01-31       Impact factor: 3.575

3.  Transcription by single molecules of RNA polymerase observed by light microscopy.

Authors:  D A Schafer; J Gelles; M P Sheetz; R Landick
Journal:  Nature       Date:  1991-08-01       Impact factor: 49.962

4.  Bead movement by single kinesin molecules studied with optical tweezers.

Authors:  S M Block; L S Goldstein; B J Schnapp
Journal:  Nature       Date:  1990-11-22       Impact factor: 49.962

5.  Movement of microtubules by single kinesin molecules.

Authors:  J Howard; A J Hudspeth; R D Vale
Journal:  Nature       Date:  1989-11-09       Impact factor: 49.962

6.  Cell motility. Variations on the theme of movement.

Authors:  E W Taylor
Journal:  Nature       Date:  1993-01-14       Impact factor: 49.962

7.  Direct observation of kinesin stepping by optical trapping interferometry.

Authors:  K Svoboda; C F Schmidt; B J Schnapp; S M Block
Journal:  Nature       Date:  1993-10-21       Impact factor: 49.962

8.  Visualization of single molecules of RNA polymerase sliding along DNA.

Authors:  H Kabata; O Kurosawa; I Arai; M Washizu; S A Margarson; R E Glass; N Shimamoto
Journal:  Science       Date:  1993-12-03       Impact factor: 47.728

9.  Evidence for alternating head catalysis by kinesin during microtubule-stimulated ATP hydrolysis.

Authors:  D D Hackney
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-19       Impact factor: 11.205

10.  Pre-steady-state kinetics of the microtubule-kinesin ATPase.

Authors:  S P Gilbert; K A Johnson
Journal:  Biochemistry       Date:  1994-02-22       Impact factor: 3.162

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  89 in total

1.  Models of motor-assisted transport of intracellular particles.

Authors:  D A Smith; R M Simmons
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  Properties of the stochastic energization-relaxation channel model for vectorial ion transport.

Authors:  E Muneyuki; T A Fukami
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

3.  The C-terminus of tubulin increases cytoplasmic dynein and kinesin processivity.

Authors:  Z Wang; M P Sheetz
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

Review 4.  Constraints on models for the flagellar rotary motor.

Authors:  H C Berg
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2000-04-29       Impact factor: 6.237

Review 5.  The role of thermal activation in motion and force generation by molecular motors.

Authors:  R D Astumian
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2000-04-29       Impact factor: 6.237

6.  A chemically reversible Brownian motor: application to kinesin and Ncd.

Authors:  R D Astumian; I Derényi
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

7.  Simple mechanochemistry describes the dynamics of kinesin molecules.

Authors:  M E Fisher; A B Kolomeisky
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-26       Impact factor: 11.205

Review 8.  Molecular motors: thermodynamics and the random walk.

Authors:  N Thomas; Y Imafuku; K Tawada
Journal:  Proc Biol Sci       Date:  2001-10-22       Impact factor: 5.349

9.  Probing the kinesin reaction cycle with a 2D optical force clamp.

Authors:  Steven M Block; Charles L Asbury; Joshua W Shaevitz; Matthew J Lang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-18       Impact factor: 11.205

10.  Single-molecule assay reveals strand switching and enhanced processivity of UvrD.

Authors:  Marie-Noëlle Dessinges; Timothée Lionnet; Xu Guang Xi; David Bensimon; Vincent Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

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