Literature DB >> 11106613

The anomalous mole fraction effect in Chara: gating at the edge of temporal resolution.

A Farokhi1, M Keunecke, U P Hansen.   

Abstract

The anomalous mole fraction effect (AMFE) of the K(+) channel in excised patches of the tonoplast of Chara showed a minimum of apparent open-channel current at 20 mM Tl(+) and 230 mM K(+). Time series obtained at a sampling rate of 100 kHz (filter 25 kHz) were analyzed by three methods to find out whether the AMFE results from an effect on gating or on the conductivity of the open state. Fitting the amplitude histograms by a superposition of gaussians showed a broadening in the presence of Tl(+). Dwell-time analysis based on an O-O-C-C-C model failed to evaluate rate constants above the filter frequency. Thus, the absence of any reduction of apparent open-channel current in time series simulated with the evaluated rate constants could not be taken as evidence against the hypothesis of gating. Finally, a direct fit of the measured time series using five different 5-state Hidden Markov models revealed that the presence of Tl(+) changed the rate constants in such a way that the number of transitions into the short-lived open state (30 micros) increased strongly compared to those in the absence of Tl(+). These models explain 25% reduction of apparent single-channel current amplitude through a rapid gating mechanism.

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Year:  2000        PMID: 11106613      PMCID: PMC1301184          DOI: 10.1016/S0006-3495(00)76542-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  31 in total

1.  Signal processing techniques for channel current analysis based on hidden Markov models.

Authors:  S H Chung; P W Gage
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

2.  How powerful is the dwell-time analysis of multichannel records?

Authors:  R Blunck; U Kirst; T Riessner; U Hansen
Journal:  J Membr Biol       Date:  1998-09-01       Impact factor: 1.843

3.  Analysis of multichannel patch clamp recordings by hidden Markov models.

Authors:  S Klein; J Timmer; J Honerkamp
Journal:  Biometrics       Date:  1997-09       Impact factor: 2.571

4.  Anomalous mole fraction effect, electrostatics, and binding in ionic channels.

Authors:  W Nonner; D P Chen; B Eisenberg
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

5.  Use-dependent blockers and exit rate of the last ion from the multi-ion pore of a K+ channel.

Authors:  T Baukrowitz; G Yellen
Journal:  Science       Date:  1996-02-02       Impact factor: 47.728

6.  Mechanism of ion permeation through calcium channels.

Authors:  P Hess; R W Tsien
Journal:  Nature       Date:  1984 May 31-Jun 6       Impact factor: 49.962

7.  A model for anomalous rectification: electrochemical-potential-dependent gating of membrane channels.

Authors:  S Ciani; S Krasne; S Miyazaki; S Hagiwara
Journal:  J Membr Biol       Date:  1978-12-15       Impact factor: 1.843

8.  Potassium channels as multi-ion single-file pores.

Authors:  B Hille; W Schwarz
Journal:  J Gen Physiol       Date:  1978-10       Impact factor: 4.086

9.  Interaction between the pore and a fast gate of the cardiac sodium channel.

Authors:  C Townsend; R Horn
Journal:  J Gen Physiol       Date:  1999-02       Impact factor: 4.086

10.  Anomalous permeabilities of the egg cell membrane of a starfish in K+-Tl+ mixtures.

Authors:  S Hagiwara; S Miyazaki; S Krasne; S Ciani
Journal:  J Gen Physiol       Date:  1977-09       Impact factor: 4.086

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  11 in total

1.  Applying hidden Markov models to the analysis of single ion channel activity.

Authors:  L Venkataramanan; F J Sigworth
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

2.  Distributions-per-level: a means of testing level detectors and models of patch-clamp data.

Authors:  I Schröder; T Huth; V Suitchmezian; J Jarosik; S Schnell; U P Hansen
Journal:  J Membr Biol       Date:  2004-01-01       Impact factor: 1.843

Review 3.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Authors:  Indra Schroeder
Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

4.  A subsequent fit of time series and amplitude histogram of patch-clamp records reveals rate constants up to 1 per microsecond.

Authors:  I Schröder; P Harlfinger; T Huth; U P Hansen
Journal:  J Membr Biol       Date:  2005-01       Impact factor: 1.843

5.  The power of two-dimensional dwell-time analysis for model discrimination, temporal resolution, multichannel analysis and level detection.

Authors:  Tobias Huth; Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2007-06-06       Impact factor: 1.843

6.  Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  Eur Biophys J       Date:  2009-07-21       Impact factor: 1.733

7.  Interference of shot noise of open-channel current with analysis of fast gating: patchers do not (Yet) have to care.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2009-06-24       Impact factor: 1.843

Review 8.  High bandwidth approaches in nanopore and ion channel recordings - A tutorial review.

Authors:  Andreas J W Hartel; Siddharth Shekar; Peijie Ong; Indra Schroeder; Gerhard Thiel; Kenneth L Shepard
Journal:  Anal Chim Acta       Date:  2019-01-25       Impact factor: 6.558

9.  Saturation and microsecond gating of current indicate depletion-induced instability of the MaxiK selectivity filter.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  J Gen Physiol       Date:  2007-07       Impact factor: 4.086

10.  Tl+-induced micros gating of current indicates instability of the MaxiK selectivity filter as caused by ion/pore interaction.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  J Gen Physiol       Date:  2008-04       Impact factor: 4.086

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