Literature DB >> 3955173

Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.

S P Williams, B D Athey, L J Muglia, R S Schappe, A H Gough, J P Langmore.   

Abstract

Four classes of models have been proposed for the internal structure of eukaryotic chromosome fibers--the solenoid, twisted-ribbon, crossed-linker, and superbead models. We have collected electron image and x-ray scattering data from nuclei, and isolated chromatin fibers of seven different tissues to distinguish between these models. The fiber diameters are related to the linker lengths by the equation: D(N) = 19.3 + 0.23 N, where D(N) is the external diameter (nm) and N is the linker length (base pairs). The number of nucleosomes per unit length of the fibers is also related to linker length. Detailed studies were done on the highly regular chromatin from erythrocytes of Necturus (mud puppy) and sperm of Thyone (sea cucumber). Necturus chromatin fibers (N = 48 bp) have diameters of 31 nm and have 7.5 +/- 1 nucleosomes per 10 nm along the axis. Thyone chromatin fibers (N = 87 bp) have diameters of 39 nm and have 12 +/- 2 nucleosomes per 10 nm along the axis. Fourier transforms of electron micrographs of Necturus fibers showed left-handed helical symmetry with a pitch of 25.8 +/- 0.8 nm and pitch angle of 32 +/- 3 degrees, consistent with a double helix. Comparable conclusions were drawn from the Thyone data. The data do not support the solenoid, twisted-ribbon, or supranucleosomal particle models. The data do support two crossed-linker models having left-handed double-helical symmetry and conserved nucleosome interactions.

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Year:  1986        PMID: 3955173      PMCID: PMC1329627          DOI: 10.1016/S0006-3495(86)83637-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

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Authors:  D L CASPAR
Journal:  Adv Protein Chem       Date:  1963

2.  AN OPTICAL METHOD FOR THE ANALYSIS OF PERIODICITIES IN ELECTRON MICROGRAPHS, AND SOME OBSERVATIONS ON THE MECHANISM OF NEGATIVE STAINING.

Authors:  A KLUG; J E BERGER
Journal:  J Mol Biol       Date:  1964-12       Impact factor: 5.469

3.  Nuclear proteins from a somatic and a germinal tissue of the echinoderm Holothuria tubulosa.

Authors:  J A Subirana
Journal:  Exp Cell Res       Date:  1970-12       Impact factor: 3.905

4.  A triple helix model for the structure of chromatin fiber.

Authors:  V Makarov; S Dimitrov; V Smirnov; I Pashev
Journal:  FEBS Lett       Date:  1985-02-25       Impact factor: 4.124

5.  Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis.

Authors:  W Keller
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

6.  Higher-order structure of nucleosome oligomers from short-repeat chromatin.

Authors:  E C Pearson; P J Butler; J O Thomas
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

7.  Organization of internucleosomal DNA in rat liver chromatin.

Authors:  F Strauss; A Prunell
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

8.  A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths.

Authors:  P J Butler
Journal:  EMBO J       Date:  1984-11       Impact factor: 11.598

9.  Electron-microscope observations on the organization of heterochromatin in certain cells.

Authors:  H G Davies
Journal:  J Cell Sci       Date:  1968-03       Impact factor: 5.285

10.  The polymerization of actin. II. How nonfilamentous actin becomes nonrandomly distributed in sperm: evidence for the association of this actin with membranes.

Authors:  L G Tilney
Journal:  J Cell Biol       Date:  1976-04       Impact factor: 10.539

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  75 in total

1.  DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.

Authors:  D Z Staynov
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

2.  Direct detection of linker DNA bending in defined-length oligomers of chromatin.

Authors:  J Yao; P T Lowary; J Widom
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

3.  Dynamics of the higher-order structure of chromatin.

Authors:  Ping Chen; Guohong Li
Journal:  Protein Cell       Date:  2010-11       Impact factor: 14.870

4.  Higher-order structure of Saccharomyces cerevisiae chromatin.

Authors:  P T Lowary; J Widom
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

5.  The superstructure of chromatin and its condensation mechanism. VI. Electric dichroism and model calculations.

Authors:  M H Koch; Z Sayers; A M Michon; P Sicre; R Marquet; C Houssier
Journal:  Eur Biophys J       Date:  1989       Impact factor: 1.733

Review 6.  Organization of interphase chromatin.

Authors:  Rachel A Horowitz-Scherer; Christopher L Woodcock
Journal:  Chromosoma       Date:  2005-12-17       Impact factor: 4.316

7.  Structural elements of bulk chromatin within metaphase chromosomes.

Authors:  Juan Manuel Caravaca; Silvia Caño; Isaac Gállego; Joan-Ramon Daban
Journal:  Chromosome Res       Date:  2005-10-24       Impact factor: 5.239

8.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

9.  Highly compact folding of chromatin induced by cellular cation concentrations. Evidence from atomic force microscopy studies in aqueous solution.

Authors:  Silvia Caño; Juan Manuel Caravaca; Marc Martín; Joan-Ramon Daban
Journal:  Eur Biophys J       Date:  2006-03-30       Impact factor: 1.733

Review 10.  A variable topology for the 30-nm chromatin fibre.

Authors:  Chenyi Wu; Andrew Bassett; Andrew Travers
Journal:  EMBO Rep       Date:  2007-12       Impact factor: 8.807

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