Literature DB >> 6510410

A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths.

P J Butler.   

Abstract

Earlier work on the condensation of chromatins of different repeat lengths into the 30 nm fibre has been surveyed and it is shown that the external geometry of the fibre must be the same for all the chromatins. This can only be fitted by a helical coiling of nucleosomes into a solenoid with the linker DNA disposed internally. On this basis, various models were calculated and compared with published electric dichroism data. The only good fit is found with a 'reverse-loop' model, where the linker DNA forms a complete turn into the hole of the solenoid, of opposite hand to the nucleosomal DNA superhelix. This gives a topological linking number of one per nucleosome and would resolve the 'linking number paradox' if the DNA screw is the same in chromatin as in solution. The feasibility of a reverse-loop for short linkers (down to 15 base pairs) was investigated by model building and kinks of approximately 120 degrees into both DNA grooves are described, which will allow such packing. There will, however, be a 'forbidden' range for the linker DNA length, between approximately 1 and 14 bp, corresponding to nucleosomal repeats of 163 and 176 bp.

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Year:  1984        PMID: 6510410      PMCID: PMC557736          DOI: 10.1002/j.1460-2075.1984.tb02180.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  31 in total

1.  Kinky helix.

Authors:  F H Crick; A Klug
Journal:  Nature       Date:  1975-06-12       Impact factor: 49.962

2.  Solenoidal model for superstructure in chromatin.

Authors:  J T Finch; A Klug
Journal:  Proc Natl Acad Sci U S A       Date:  1976-06       Impact factor: 11.205

3.  Organization of DNA in chromatin.

Authors:  H M Sobell; C C Tsai; S G Gilbert; S C Jain; T D Sakore
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

4.  Folding of the DNA double helix in chromatin-like structures from simian virus 40.

Authors:  J E Germond; B Hirt; P Oudet; M Gross-Bellark; P Chambon
Journal:  Proc Natl Acad Sci U S A       Date:  1975-05       Impact factor: 11.205

5.  Spheroid chromatin units (v bodies).

Authors:  A L Olins; D E Olins
Journal:  Science       Date:  1974-01-25       Impact factor: 47.728

6.  The linear dichroism of oriented helical and superhelical polymers.

Authors:  R L Rill
Journal:  Biopolymers       Date:  1972       Impact factor: 2.505

7.  Action of micrococcal nuclease on chromatin and the location of histone H1.

Authors:  M Noll; R D Kornberg
Journal:  J Mol Biol       Date:  1977-01-25       Impact factor: 5.469

8.  Orientation of nucleosomes and linker DNA in calf thymus chromatin determined by photochemical dichroism.

Authors:  S Mitra; D Sen; D M Crothers
Journal:  Nature       Date:  1984 Mar 15-21       Impact factor: 49.962

9.  A comparison of the structure of chicken erythrocyte and chicken liver chromatin.

Authors:  N R Morris
Journal:  Cell       Date:  1976-12       Impact factor: 41.582

10.  Higher order structure in a short repeat length chromatin.

Authors:  J Allan; D C Rau; N Harborne; H Gould
Journal:  J Cell Biol       Date:  1984-04       Impact factor: 10.539

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  26 in total

1.  DNA-bridging by a palindromic alpha-helix.

Authors:  M Suzuki
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

2.  The superstructure of chromatin and its condensation mechanism. VI. Electric dichroism and model calculations.

Authors:  M H Koch; Z Sayers; A M Michon; P Sicre; R Marquet; C Houssier
Journal:  Eur Biophys J       Date:  1989       Impact factor: 1.733

3.  Electrostatic mechanism of nucleosomal array folding revealed by computer simulation.

Authors:  Jian Sun; Qing Zhang; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-26       Impact factor: 11.205

4.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

5.  Diffusion-enhanced resonance energy transfer shows that linker-DNA accessibility decreases during salt-induced chromatin condensation.

Authors:  R Labarbe; S Mignon; S Flock; C Houssier
Journal:  J Fluoresc       Date:  1996-06       Impact factor: 2.217

Review 6.  What determines the folding of the chromatin fiber?

Authors:  K van Holde; J Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

7.  Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin.

Authors:  J Bednar; R A Horowitz; S A Grigoryev; L M Carruthers; J C Hansen; A J Koster; C L Woodcock
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

8.  Globular and fibrous structure in barley chromosomes revealed by high-resolution scanning electron microscopy.

Authors:  M Iwano; K Fukui; S Takaichi; A Isogai
Journal:  Chromosome Res       Date:  1997-08       Impact factor: 5.239

9.  Differential polarization imaging. II. Symmetry properties and calculations.

Authors:  M Kim; L Ulibarri; C Bustamante
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

10.  Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy.

Authors:  S E Gerchman; V Ramakrishnan
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

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