Literature DB >> 18059311

A variable topology for the 30-nm chromatin fibre.

Chenyi Wu1, Andrew Bassett, Andrew Travers.   

Abstract

The structure of the 30-nm chromatin fibre is an important determinant of the regulation of eukaryotic transcription. A fundamental issue is whether the stacking of nucleosomes in this fibre is organized as a one-start or two-start helix. We argue that all recent experimental data are compatible with a two-start helix and propose that the topology of the fibre, but not the mode of stacking the nucleosomes, is dependent on the length of the linker DNA. This arrangement conserves nucleosome stacking and thus the external morphology of the fibre, and also ensures that the fibre adopts the highest available packing density.

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Year:  2007        PMID: 18059311      PMCID: PMC2267236          DOI: 10.1038/sj.embor.7401115

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  44 in total

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Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

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Authors:  S S Ner; T Blank; M L Pérez-Paralle; T A Grigliatti; P B Becker; A A Travers
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Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

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Journal:  Cell       Date:  1975-04       Impact factor: 41.582

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Journal:  Proc Natl Acad Sci U S A       Date:  1976-06       Impact factor: 11.205

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Journal:  J Biol Chem       Date:  1995-09-22       Impact factor: 5.157

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Journal:  FEBS Lett       Date:  1976-10-15       Impact factor: 4.124

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Journal:  FEBS Lett       Date:  1976-07-15       Impact factor: 4.124

9.  Linker histone-dependent organization and dynamics of nucleosome entry/exit DNAs.

Authors:  Andrei Sivolob; Ariel Prunell
Journal:  J Mol Biol       Date:  2003-08-29       Impact factor: 5.469

10.  Organization of internucleosomal DNA in rat liver chromatin.

Authors:  F Strauss; A Prunell
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

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  18 in total

Review 1.  Toward convergence of experimental studies and theoretical modeling of the chromatin fiber.

Authors:  Tamar Schlick; Jeff Hayes; Sergei Grigoryev
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

2.  Histone octamer helical tubes suggest that an internucleosomal four-helix bundle stabilizes the chromatin fiber.

Authors:  Timothy D Frouws; Hugh-G Patterton; Bryan T Sewell
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

3.  The effect of internucleosomal interaction on folding of the chromatin fiber.

Authors:  René Stehr; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

Review 4.  Nuclear envelope-limited chromatin sheets (ELCS) and heterochromatin higher order structure.

Authors:  Donald E Olins; Ada L Olins
Journal:  Chromosoma       Date:  2009-06-12       Impact factor: 4.316

5.  The dynamics of individual nucleosomes controls the chromatin condensation pathway: direct atomic force microscopy visualization of variant chromatin.

Authors:  Fabien Montel; Hervé Menoni; Martin Castelnovo; Jan Bednar; Stefan Dimitrov; Dimitar Angelov; Cendrine Faivre-Moskalenko
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

Review 6.  Insight into the machinery that oils chromatin dynamics.

Authors:  Roni H G Wright; Narcis Fernandez-Fuentes; Baldomero Oliva; Miguel Beato
Journal:  Nucleus       Date:  2016-11-28       Impact factor: 4.197

7.  Irregular Chromatin: Packing Density, Fiber Width, and Occurrence of Heterogeneous Clusters.

Authors:  Gaurav Bajpai; Ranjith Padinhateeri
Journal:  Biophys J       Date:  2019-11-14       Impact factor: 4.033

8.  Differential stability of DNA crossovers in solution mediated by divalent cations.

Authors:  Péter Várnai; Youri Timsit
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

9.  Mapping in vivo chromatin interactions in yeast suggests an extended chromatin fiber with regional variation in compaction.

Authors:  Job Dekker
Journal:  J Biol Chem       Date:  2008-10-16       Impact factor: 5.157

10.  The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes.

Authors:  Amir B Cohanim; Tali E Haran
Journal:  Nucleic Acids Res       Date:  2009-08-21       Impact factor: 16.971

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