Literature DB >> 2682643

Higher-order structure of Saccharomyces cerevisiae chromatin.

P T Lowary1, J Widom.   

Abstract

We have developed a method for partially purifying chromatin from Saccharomyces cerevisiae (baker's yeast) to a level suitable for studies of its higher-order folding. This has required the use of yeast strains that are free of the ubiquitous yeast "killer" virus. Results from dynamic light scattering, electron microscopy, and x-ray diffraction show that the yeast chromatin undergoes a cation-dependent folding into 30-nm filaments that resemble those characteristic of higher-cell chromatin; moreover, the packing of nucleosomes within the yeast 30-nm filaments is similar to that of higher cells. These results imply that yeast has a protein or protein domain that serves the role of the histone H 1 found in higher cells; physical and genetic studies of the yeast activity could help elucidate the structure and function of H 1. Images of the yeast 30-nm filaments can be used to test crossed-linker models for 30-nm filament structure.

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Year:  1989        PMID: 2682643      PMCID: PMC298261          DOI: 10.1073/pnas.86.21.8266

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  The salt dependence of chicken and yeast chromatin structure. Effects on internucleosomal organization and relation to active chromatin.

Authors:  D Lohr
Journal:  J Biol Chem       Date:  1986-07-25       Impact factor: 5.157

2.  Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.

Authors:  S P Williams; B D Athey; L J Muglia; R S Schappe; A H Gough; J P Langmore
Journal:  Biophys J       Date:  1986-01       Impact factor: 4.033

3.  The effect of histone H1 on the compaction of oligonucleosomes. A quasielastic light scattering study.

Authors:  C Marion; C Hesse-Bezot; P Bezot; M J Marion; B Roux; J C Bernengo
Journal:  Biophys Chem       Date:  1985-06       Impact factor: 2.352

4.  Structure of the nucleosome core particle at 7 A resolution.

Authors:  T J Richmond; J T Finch; B Rushton; D Rhodes; A Klug
Journal:  Nature       Date:  1984 Oct 11-17       Impact factor: 49.962

5.  Structure of the 300A chromatin filament: X-ray diffraction from oriented samples.

Authors:  J Widom; A Klug
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

6.  Yeast may not contain histone H1: the only known 'histone H1-like' protein in Saccharomyces cerevisiae is a mitochondrial protein.

Authors:  U Certa; M Colavito-Shepanski; M Grunstein
Journal:  Nucleic Acids Res       Date:  1984-11-12       Impact factor: 16.971

7.  Higher-order structure of nucleosome oligomers from short-repeat chromatin.

Authors:  E C Pearson; P J Butler; J O Thomas
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

8.  Higher-order structure of long repeat chromatin.

Authors:  J Widom; J T Finch; J O Thomas
Journal:  EMBO J       Date:  1985-12-01       Impact factor: 11.598

9.  Higher order structure in a short repeat length chromatin.

Authors:  J Allan; D C Rau; N Harborne; H Gould
Journal:  J Cell Biol       Date:  1984-04       Impact factor: 10.539

10.  Ultrastructural organization of yeast chromatin.

Authors:  J B Rattner; C Saunders; J R Davie; B A Hamkalo
Journal:  J Cell Biol       Date:  1982-04       Impact factor: 10.539

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  27 in total

1.  Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome.

Authors:  R U Protacio; G Li; P T Lowary; J Widom
Journal:  Mol Cell Biol       Date:  2000-12       Impact factor: 4.272

2.  Collaborative competition mechanism for gene activation in vivo.

Authors:  Joanna A Miller; Jonathan Widom
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

3.  Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.

Authors:  Sergei A Grigoryev; Gavin Bascom; Jenna M Buckwalter; Michael B Schubert; Christopher L Woodcock; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

4.  Hydrodynamic studies on defined heterochromatin fragments support a 30-nm fiber having six nucleosomes per turn.

Authors:  Rodolfo Ghirlando; Gary Felsenfeld
Journal:  J Mol Biol       Date:  2008-01-03       Impact factor: 5.469

5.  General method for rapid purification of native chromatin fragments.

Authors:  Vyacheslav I Kuznetsov; Spencer A Haws; Catherine A Fox; John M Denu
Journal:  J Biol Chem       Date:  2018-05-24       Impact factor: 5.157

Review 6.  Nuclear organization and transcriptional silencing in yeast.

Authors:  M Gotta; S M Gasser
Journal:  Experientia       Date:  1996-12-15

7.  Characterization of DNA damage in yeast apoptosis induced by hydrogen peroxide, acetic acid, and hyperosmotic shock.

Authors:  Gabriela F Ribeiro; Manuela Côrte-Real; Björn Johansson
Journal:  Mol Biol Cell       Date:  2006-08-09       Impact factor: 4.138

8.  Differential nucleosome spacing in neurons and glia.

Authors:  Sean C Clark; Răzvan V Chereji; Philip R Lee; R Douglas Fields; David J Clark
Journal:  Neurosci Lett       Date:  2019-10-19       Impact factor: 3.046

9.  Isolation of the yeast histone octamer.

Authors:  Y Lorch; R D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-08       Impact factor: 11.205

10.  Low levels of exogenous histone H1 in yeast cause cell death.

Authors:  G Miloshev; P Venkov; K van Holde; J Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

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