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Literature DB >> 11894908

Organization of internucleosomal DNA in rat liver chromatin.

Abstract

A detailed analysis of the length distribution of DNA in nucleosome dimers trimmed with exonuclease III and S1 nuclease suggests that the previously described variation of internucleosomal distance in rat liver occurs, at least for a subset of the nucleosomes, by integral multiples of the helical repeat of the DNA. Results obtained upon digestion of chromatin with DNase II further suggest that lengths of internucleosomal DNA are integral multiples of the helical repeat of the DNA plus approximately 5 bp. Restraints imposed by these features on the arrangement of nucleosomes along the fiber are discussed.

Entities: Chemical

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Year: 1983 PMID： 11894908 PMCID： PMC555085 DOI： 10.1002/j.1460-2075.1983.tb01379.x

Source DB: PubMed Journal: EMBO J ISSN： 0261-4189 Impact factor: 11.598

28 in total

1. Chain length determination of small double- and single-stranded DNA molecules by polyacrylamide gel electrophoresis.

Authors: T Maniatis; A Jeffrey; H van deSande
Journal: Biochemistry Date: 1975-08-26 Impact factor: 3.162

2. Structure of nucleosome core particles of chromatin.

Authors: J T Finch; L C Lutter; D Rhodes; R S Brown; B Rushton; M Levitt; A Klug
Journal: Nature Date: 1977-09-01 Impact factor: 49.962

3. Reconstitution of chromatin core particles.

Authors: K Tatchell; K E Van Holde
Journal: Biochemistry Date: 1977-11-29 Impact factor: 3.162

4. Heterogeneity in nucleosome spacing.

Authors: D Z Martin; R D Todd; D Lang; P N Pei; W T Garrard
Journal: J Biol Chem Date: 1977-11-25 Impact factor: 5.157

5. A new method for sequencing DNA.

Authors: A M Maxam; W Gilbert
Journal: Proc Natl Acad Sci U S A Date: 1977-02 Impact factor: 11.205

6. On the occurrence of nucleosome phasing in chromatin.

Authors: D Lohr; K Tatchell; K E Van Holde
Journal: Cell Date: 1977-11 Impact factor: 41.582

Review 7. Structure of chromatin.

Authors: R D Kornberg
Journal: Annu Rev Biochem Date: 1977 Impact factor: 23.643

8. The fractionation of high-molecular-weight ribonucleic acid by polyacrylamide-gel electrophoresis.

Authors: U E Loening
Journal: Biochem J Date: 1967-01 Impact factor: 3.857

9. Sequence-dependent helical periodicity of DNA.

Authors: D Rhodes; A Klug
Journal: Nature Date: 1981-07-23 Impact factor: 49.962

10. Nucleosomal DNA is digested to repeats of 10 bases by exonuclease III.

Authors: D Riley; H Weintraub
Journal: Cell Date: 1978-02 Impact factor: 41.582

19 in total

1. DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.

Authors: D Z Staynov
Journal: Nucleic Acids Res Date: 2000-08-15 Impact factor: 16.971

10. Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping.

Authors: Tatiana Nikitina; Difei Wang; Misha Gomberg; Sergei A Grigoryev; Victor B Zhurkin
Journal: J Mol Biol Date: 2013-02-28 Impact factor: 5.469

Organization of internucleosomal DNA in rat liver chromatin.

1. Chain length determination of small double- and single-stranded DNA molecules by polyacrylamide gel electrophoresis.

2. Structure of nucleosome core particles of chromatin.

3. Reconstitution of chromatin core particles.

4. Heterogeneity in nucleosome spacing.

5. A new method for sequencing DNA.

6. On the occurrence of nucleosome phasing in chromatin.

Review 7. Structure of chromatin.

8. The fractionation of high-molecular-weight ribonucleic acid by polyacrylamide-gel electrophoresis.

9. Sequence-dependent helical periodicity of DNA.

10. Nucleosomal DNA is digested to repeats of 10 bases by exonuclease III.

1. DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.

2. Short nucleosome repeats impose rotational modulations on chromatin fibre folding.

Review 3. A variable topology for the 30-nm chromatin fibre.

4. A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells.

5. Topological polymorphism of the two-start chromatin fiber.

6. Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions.

7. Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.

8. A chromatin folding model that incorporates linker variability generates fibers resembling the native structures.

9. Nucleotide sequence-directed mapping of the nucleosomes.

10. Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping.