| Literature DB >> 34913046 |
Brayan Viana Ribeiro1, Taís Aparecida Reis Cordeiro2, Guilherme Ramos Oliveira E Freitas3, Lucas Franco Ferreira2, Diego Leoni Franco1.
Abstract
The recent events of outbreaks related to different respiratory viruses in the past few years, exponentiated by the pandemic caused by the coronavirus disease 2019 (COVID-19), reported worldwide caused by SARS-CoV-2, raised a concern and increased the search for more information on viruses-based diseases. The detection of the virus with high specificity and sensitivity plays an important role for an accurate diagnosis. Despite the many efforts to identify the SARS-CoV-2, the diagnosis still relays on expensive and time-consuming analysis. A fast and reliable alternative is the use of low-cost biosensor for in loco detection. This review gathers important contributions in the biosensor area regarding the most current respiratory viruses, presents the advances in the assembly of the devices and figures of merit. All information is useful for further biosensor development for the detection of respiratory viruses, such as for the new coronavirus.Entities:
Keywords: Biosensors; Detection; Diagnosis; Respiratory virus
Year: 2020 PMID: 34913046 PMCID: PMC7428963 DOI: 10.1016/j.talo.2020.100007
Source DB: PubMed Journal: Talanta Open ISSN: 2666-8319
Fig. 1A general illustration of a biosensor.
Fig. 2RNA virus replication in an intracellular space.
Data of the deadliest RNA viruses around the world.
| Virus | Cases | Deaths | Reference |
|---|---|---|---|
| Influenza (seasonal) | 3 – 5 million | 290,000 – 650,000 | |
| RSV | ~30 million | > 100,000 | |
| MERS | 2494 | 858 | |
| SARS | 8096 | 774 |
These are annual estimates.
Data obtained from September 2012 – February 2019.
Data obtained from November 2002 – July 2003.
Influenza virus biosensors data.
| Detection technique | Substrate | Immobilized material / Analyte | Monitored compound | Working Range | LOD | Sample | Ref. |
|---|---|---|---|---|---|---|---|
| Electrochemical – Chronoamperometry and DPV | Dual carbon SPE | H1N1 antibody/ HA protein of the H1N1 | Methylene Blue | 25.0 – 500 pM | 9.40 pM | Commercial H1N1 | |
| H5N1 antibody/ HA protein of the H5N1 | 8.30 pM | Commercial H5N1 | |||||
| Electrochemical – Amperometry | Glass wafer/PDMS | H1N1 antibody/ H1N1 antigen (sandwich ELISA-like assay) | TMB | 1.00 pg.mL−1 – 10.0 ng.mL−1 | 1.00 pg.mL−1 | Commercial ELISA kits | |
| H5N1 antibody/ H5N1 antigen (sandwich ELISA-like assay) | |||||||
| H7N9 antibody/ H7N9 antigen (sandwich ELISA-like assay) | |||||||
| Electrochemical – OSWV | Gold electrode | His6—H1 HA/ anti-H1N1 | Potencial of peak redox Cu(II)/Cu (I) current | 1.00 × 109- 1.00 × 108 sera dilution | 1.00 × 109 – 1.00 × 108 sera dilution | Vaccinated mice sera | |
| Optical – SPR | Gold sensor | H5N1 antigen/ H5N1 antibody | Label-free detection | Not determined | 193.3 ng.mL−1 | – | |
| Electrochemical - EIS | Gold SPE | ssDNA of the H1N1/ ss-cDNA of theH1N1 | Label-free detection | 0.000 ng.mL−1 – 166,7 ng.mL−1 | 0.667 ng.mL−1 | Nasal swab and oropharyngeal samples | |
| Electrochemical – Amperometry | Gold electrode | DNA tetrahedral probe of the H7N9/ ssDNA of H7N9 | TMB | 1.00 pM – 2.50 nM | 0.750 pM | Throat swab samples | |
| Electrochemical – EIS | Rolled-up gold nanomembrane microelectrodes | ssDNA of the H1N1/ ssDNA of the H1N1 | Label-free detection | 20.0 aM – 2.00 pM | 20 aM | Commercil samples | |
| Optical – UV–vis spectrometer | PDA vesicles | H5N1 antibody/ HA of the H5N1 | PDA color change | 5.40 × 10−4 – 13.5 copies.μL−1 | 0.530 copies.µL−1 | Tracheal swabs collected from wild birds | |
| Electrochemical – DPV | Super-hydrophobic paper / conductive carbon paste | H1N1 antibody/ H1N1 antigen | Label-free detection | 10.0 – 1 × 104 PFU.mL−1 | 113 PFU.mL−1 | Saliva from a healthy person | |
| Optical – Scanner and ImageJ | Gold paper electrode | H1N1 antibody/ H1N1 antigen (sandwich ELISA-like assay) | TMB | 0.000 – 1 × 104 PFU.mL−1 | 1.34 PFU.mL−1 | Commercial sample | |
| Electrochemical – EIS | Label-free | 0.000 – 1 × 104 PFU.mL−1 | 3.30 PFU.mL−1 | Commercial sample | |||
| Spike saliva | |||||||
| Electrochemical – EIS | Gold electrode | Glycan / H3N2 virus | Label-free | 8.00 aM – 0.800 nM | 5.00 aM | Intact, but inactivated H3N2 particles | |
| BioScan nanomechanical cantilever system | Nanomechanical cantilever | 3′SL-PAA polymer / H5N3 surface glycoprotein | Label-free | 10.06 – 10.08 vp.mL−1 | 10.06 vp.mL−1 | Commercial H5N3 | |
| Piezoelectric – SPM | Lead zirconate titanate piezoelectric disk | 3′SL-PAA polymer / H5N3 surface glycoprotein | Label-free | 10.05 – 10.07 vp.mL−1 | 10.05 vp.mL−1 (100 µm thick) | Commercial H5N3 | |
| 10.04 vp.mL−1 (10 µm thick) | |||||||
| Electrochemical – EIS | BDD | anti-M1 H1N1 protein/ M1 protein of H1N1 | Label-free | 5.00 – 10.0 PFU.mL−1 | 1.00 fg.mL−1 | Saliva buffer | |
| Electrochemical – EIS | ITO/glass electrode | H1N1 antibody/ H1N1 antigen | Label-free | 10.0 – 10.04 PFU.mL−1 | 26.0 PFU.mL−1 (PBS) | Saliva sample | |
| 33.0 PFU.mL−1 (Saliva) | |||||||
| Multiplex RT-PCR-electrochemical genosensor - Voltmeter | Gold electrode | ssDNA of the H1N1 PCR products/ H1N1 antigen | Ferrocene | 10.04 TCID50 to 10.0° TCID50 | 10.0 TCID50.mL−1 (H1N1) | Pediatric pneumonia patients samples | |
| ssDNA of the H3N2 PCR products/ H3N2 antigen | 100 TCID50.mL−1 (H3N2) | ||||||
| Electrochemical – DPV | ITO/glass electrode | ssDNA of the H1N1/ mini-HA protein | Potassium ferrocyanide/ferricyanide | 10.0 – 10.04 PFU.mL−1 | 3.70 PFU.mL−1 | Commercial H1N1 | |
| Electrochemiluminescence | Gold electrode | HA of the H1N1/ anti-H1N1 | Immunoliposome encapsulating tris (2,2′- bipyridyl) ruthenium (II) complex | 2.70 × 102 – 2.70 × 103 PFU.mL−1 | Not determined | Commercial H1N1 | |
| Electrochemical – EIS | Gold electrode in PDMS microchannels | H1N1 antibody/ H1N1 antigen | Label-free | 1.00 – 10.04 PFU.mL−1 | 0.500 PFU.mL−1 | Commercial H1N1 | |
| Optical – IM-SPR | Gold chip | H7N9 antibody/ Attenuated reassorted H7N9 antigen | Label-free | 2.30 × 102 – 2.30 × 105 copies.mL−1 | 402 copies.mL−1 | Nasal mucosa from flu-like syndrome patients | |
| 144 copies.mL−1 | Commercial H7N9 | ||||||
| Electrochemical – DPV | SPCE | H5N1 DNA aptamer/ anti-H5N1 (sandwich ELISA-like assay) | Electrocatalytic reaction of the surface ALP with APP | 100 fM –10.0 pM | 100 fM | Diluted human serum samples spiked | |
| Electrochemical – CV | Gold electrode | Multi-functional DNA 3WJ/ HA protein of H5N1 | Fe3+/2+ of hemin | 1.00 pM – 100 nM | 1.00 pM | Chicken serum | |
| Optical – UV–vis spectra | 96-well microplate | H5N1 antibody/ H5N1 antigen (sandwich ELISA-like assay) | TMB | 0.100 – 4.00 ng.mL−1 | 0.040 ng.mL−1 | Commercial H5N1 | |
| Optical – SPR | Gold chip | H5N1 aptamer/ H5N1 whole virus (sandwich ELISA-like assay) | Aptamer-AuNPs | 1.00 × 104 – 8.00 × 104 EID50.mL−1 | 200 EID50.mL−1 | H5N1-infected feces samples | |
| Electrochemical – OSWV | Gold electrode | His6—H5 HA/ anti-H5N1 | Cu(II) ions redox current decreasing | 4.00 – 100 pg.mL−1 | 2.40 pg.mL−1 | Hen sera from individuals vaccinated and non-vaccinated | |
| Electrochemical – OSWV | Gold electrode | ssDNA of H5N1/ RNA of the H5N1 | Fe3+ | 3.00 × 103 – 3.00 × 105 copies.mL−1 | 3.00 copies.mL−1 | Biological sample | |
| Optical – Fluorescence | Ag@SiO2 NPs | H5N1 aptamer/ Recombinant HA protein of the H5N1 | Thiazole orange | 2.00 – 100 ng.mL−1 | 2.00 ng.mL−1 | Commercial H5N1 | |
| 3.50 ng.mL−1 | Human serum | ||||||
| Electrochemical – EIS | BDD | 2 – 4 mers peptide dendrimer/ H1N1 and H3N2 antigens | Label-free | 6.00 – 400 PFU,sample−1 for H3N2 and 3.00 – 400 PFU.sample−1 for H1N1 | 0.330 PFU.sample−1 for H1N1 and 0.91 PFU.sample−1 for H3N2 | Commercials HxNx | |
| Electrochemical – IT method | SPCE | H1N1 antibody/ H1N1 antigen | TMB | 4.00 – 64.0 HA unit | 0.430 HA unit | Chick embryo allantoic saliva simulated sample | |
| Electrochemical – CV | Tungsten rods | Anti-AIV NP aptamer/ AIV NP | Methylene blue | 2.00 – 12.0 nM | 1.13 nM | Negative oral and cloacal swabs from chicken | |
| Electrochemical - modified and tailored MOSFET | Portable TFT | AIV antibody/ Nucleoprotein of the AIV | Label-free | 10.01 – 10.06 EID50 mL−1 | 10.02 EID50.mL−1 | Ducks and Mallards swab samples | |
| Electrochemical – LSV | Gold electrode | H7 antibody / AIV H7 (sandwich ELISA-like assay) | AgNPs | 1.60 × 10−3 – 16.0 ng.mL−1 | 1.60 pg.mL−1 | Commercial AIV H7 | |
| Optical – NNLFA | Sample pads | AIV antibody/ AIV nucleoproteins from H5N2 (sandwich ELISA-like assay) | Ca2+ enhanced | 10.0°.5 to 10.04 EID50 mL−1 | 10.02 EID50.mL−1 | Oropharyngeal swabs and cloacal swabs from ducks experimentally infected | |
| Electrical - Magnetoresistance | GMR sensor | AIV antibody/ AIV antigen (sandwich ELISA-like assay) | Binding magnetic nanoparticles onto the GMR causes change in the resistance | 1.00 × 103 – 1.00 × 105 TCID50.mL−1 | 1.50 × 102 TCID50.mL−1 | AIVs obtained through colaboration | |
| Electrochemical – DPV | Carbon DEP-chip | H1N1 antigen/ Aptamer-AuNPs | AuNPs | 0.400 – 100 µg.mL−1 | 0.51 μg. | Human serum | |
| Optical – Reflectance measurements | SiO2-based IO nanostructures | H1N1 antibody/ H1N1 antigen | Label-free detection | 10.03 – 10.05 PFU | Not determined | Commercial H1N1 | |
| Optical – LSPR | ITO | DNA 3WJ/ HA protein from H5N1 | Label-free | 1.00 pM – 100 nM | 1.00 pM | Chicken serum | |
| Electrochemical – IPA | SPCE | Biotin and fluorescein-labelled H5 PCR amplicons | TMB | 1.00 – 15.0 mM | 7.43 µM | Commercial H5N1 | |
| Volumetric assay | MWCNT-IDE | H1N1 aptamer / H1N1 antigen (sandwich ELISA-like assay) | AuNPs | 0.010 – 100 pM | 10.0 fM (using aptamer for sandwich) | Commercial H1N1 | |
| MWCNT- IDE | H1N1 antibody / H1N1 antigen (sandwich ELISA-like assay) | AuNPs | 1.00 pM (using antibody for sandwich) | ||||
| Optical – SPR | Gold optical fiber | H6 antibody/ H6 antigen | Label-free | 10.05 – 10.09 EID50.mL−1 | 5.14 × 105 EID50.mL−1 | Tracheal samples from chickens | |
| Optical – IE | Silicon wafer | H5N1 antibody / H5N1 antigen | Label-free detection | Not determined | Not determined | Commercial H5N1 |
3′SL-PAA = synthetic sialylglycoconjugates based on a polymer matrix; 3WJ = 3 way-junction; AgNPs = silver nanoparticles; Ag@SiO2 NPs = silver@silicon dioxide nanoparticles; AIV = Avian influenza viruses; ALP = alcaline phosphatase; APP = 4-amino phenyl phosphate; AuNPs = gold nanoparticles; BDD = boron-doped diamond; DEP = disposable three-electrode screen-printed; DPV = differential pulse voltammetry; EIS = impedance spectroscopy; GMR = giant magnetoresistance; His6-H5 = histidine-tagged hemagglutinin; IDE = interdigitated dielectrode; IE = imaging ellipsometry; IM-SPR = intensity-modulated surface plasmon resonance; IO = inverse opal; IPA = intermittent pulse amperometry; ITO = indium tin oxide; LSPR = localized surface plasmon resonance; LSV = linear sweep voltammetry; MOSFET = metal−oxide semiconductor field-effect; MWCNT = multiwalled carbon nanotube; NNLPA = NIR-to-NIR lateral flow immunoassay;.
OSWV = Osteryoung square-wave voltammetric; PDA = polydiacetylene; PDMS = polydimethylsiloxane; SiO2 = silicon dioxide; SPCE = screen-printed carbon electrode; SPE = screen-printed electrode; SPM = scanning probe microscopy; SPR = surface plasmon resonance; ss-cDNA = single stranded-cDNA; TFT = thin film transistor; TMB = 3,3,5,5-tetramethylbenzidine;.
Fig. 3A schematic diagram of the designed triple-arrayed three-electrode immunosensor chip consisting of a top PDMS channel layer and a bottom glass substrate. (a) Top view of immunosensor chip with three different sensing regions for H1N1, H5N1, and H7N9, respectively. (b) Cross sectional view of H5N1 sensor region with ZnO NRs grown on the surface of PDMS and three electrodes aligned to the sensing chamber. Republished from [130]; permission conveyed through Copyright Clearance Center, Inc, License Number 4855350166819.
Coronavirus biosensors data.
| Detection technique | Substrate | Immobilized material / Analyte | Monitored compound | Working Range | LOD | Sample | Ref. |
|---|---|---|---|---|---|---|---|
| Optical – LSPR | PMMA optical fiber | Anti-SARS-CoV N protein / SARS-CoV N protein (sandwich ELISA-like assay) | Fluorophore DyLight™ 649-modified secondary antibody | 0.100 pg.mL−1 – 1.00 ng.mL−1 | 1.00 pg.mL−1 | Human serum from healthy donor | |
| Optical – Confocal laser scanning microscopy | Glass chip | SARS-CoV N protein/ QDs-conjugated RNA aptamer | Fluorescence intensy of the QDs | 0.1 – 50 pg.mL−1 | 0.100 pg.mL−1 | Synthetic RNA aptamer | |
| Optical – SPR | Gold-micropatterned chip | GBP-E-SCVme (SARS-CoV) fusion proteins / anti-SCVme | Label-free detection | Not determined | 0.200 µg.mL−1 | Rabbit anti-SCVme | |
| Colorimetric assay | Multiplexed Paper | MERS-CoV DNA/ acpcPNA-AgNPs | Color change of AgNPs aggregation | 20.0 – 1.00 × 103 nM | 1.53 nM | Synthetic DNA oligonucleotides | |
| Electrochemical – SWV | Array of carbon electrode | MERS-CoV and HumanCoV proteins/ Antibody for each virus | Reduction peak current of ferro/ferricyanide redox couple | 0.010 –1.00 × 104 ng.mL−1 | 0.400 pg.mL−1 | Spiked nasal samples (HumasCoV) | |
| 0.001 – 100 ng.mL−1 | 1.00 pg.mL−1 | Spiked nasal samples (MERS-CoV) | |||||
| Optical – LSPR | Two-dimensional gold nanoisland | SARS-CoV 2 cDNA/ SARS-CoV 2 nucleic acid | Label-free detection | 0.100 pM – 1.00 μM | 0.220 pM | Synthetic oligonucleotide | |
| Electrochemical – Semiconductor analyzer | Graphene FET | SARS-CoV 2 spike antibody/ SARS-CoV 2 spike protein | Label-free detection | 1.00 fg.mL−1 – 10.0 pg.mL−1 | 1.00 fg.mL−1 | PBS buffer | |
| 16.0 – 1.60 × 104 PFU.mL−1 | 1.6 × 101 PFU.mL−1 | Cells culture | |||||
| 10.0 – 1.00 × 105 copies.mL−1 | 242 copies.mL−1 | Nasopharyngeal swab specimens from COVID-19 patients | |||||
| Piezoeletric | PQC sensor | SARS-CoV NG-8 aptamer/ SARS-CoV helicase protein | Magnetic bead enrichment | 0.050 – 1.00 µg.mL−1 | 3.50 ng.mL−1 | Human serum | |
| Optical – SPR | Gold chip | SARS-CoV oligonucleotide probe / SARS-CoV PCR product | Label-free detection | 1.00 nM – 1 µM | 2.00 nM | Throat swab specimens |
acpcPNA = pyrrolidinyl peptide nucleic acid; FET = Field-effect transistor; GBP-E = Gold binding polypeptides-enhanced green fluorescent protein; QD = Quantum-dots; PMMA = Polymethyl methacrylate; PPT = Plasmonic photothermal; PQC = Piezoelectric quartz crystal.
Fig. 4AFM images of the sequential binding of GBP-E-SCVme and anti-SCVme on the gold-micropatterned surface. (a) Bare gold surface, (b) binding of the GBP-E-SCVme fusion proteins onto the gold surface, and (c) subsequent binding of the anti-SCVme antibodies on the GBP-E-SCVme layer. Left, schematic diagrams for the successive binding of GBP-E-SCVme and anti-SCVme on the gold micropatterns; middle, three-dimensional topological images; right, the cross-sectional contours of samples a–c, sequentially (these are average height differences of the individual scan lines from each area). Republished from [179]; permission conveyed through Copyright Clearance Center, Inc, License Number 4855350410966.
Respiratory syncytial virus biosensors data.
| Detection technique | Substrate | Immobilized material / Analyte | Monitored compound | Working Range | LOD | Sample | Ref. |
|---|---|---|---|---|---|---|---|
| Optical – SPR | Gold chip | RSV oligonucleotide probe / RSV PCR product | Label-free detection | 1.00 nM – 1.00 µM | 3.00 nM | Throat swab specimens | |
| Optical – Microarray scanner | Gold-plated tungsten filaments | RSV DNA hairpin structures (molecular beacon style)/ RNA from cell culture | Label-free detection | Not determined | 11.9 PFU | RNA target extrated from cell culture | |
| Electrochemical – Amperometric through SPE | Polystyrene slide | Anti-RSV/ RSV antigen (sandwich ELISA-like assay) | TMB | Not determined | 1:5000 (RSV Ag dilution) | Respiratory secretion clinical samples | |
| Electrochemical – Amperometric | Gold chip | aMB with SA-HRP/ RSV DNA | TMB | 100 pM – 100 nM | 11.0 pM | RSV DNA in 10% human serum | |
| aMB with SA-HRP/ RSV miRNA let-7a | 20.0 pM – 100 nM | 3.40 pM | |||||
| Optical – Absorbance | Plate/Gold nanoparticle layer | Anti-RSV / RSV antigen | TMB | 0.050 – 30.0 pg.mL−1 | 0.010 pg.mL−1 | Human serum from healthy donor |
aMB = Allosteric molecular beacons; SA-HRP = Streptavidin aptamer-horseradish peroxidase; TMB = 3,3,5,5-Tetramethylbenzidine;.
Fig. 5The principle of the RSV-aMB E-sensor for RSV DNA detection. Republished from [195]; permission conveyed through Copyright Clearance Center, Inc, License Number 4855350615984.
Fig. 6Schematic representation of the thin film biosensor. (A) Unreacted thin film biosensor surface with covalently attached capture probe. The surface coating, silicon nitride (Si3N4), appears gold in white light. (B) Surface reacting with target sequence to produce thin film. Target immobilization triggers reactions that enzymatically transduce the formation of hybrids on the surface into molecular thin films causing a change in color from gold to purple. Republished from [203]; permission conveyed through Copyright Clearance Center, Inc, License Number 4876701161684.
Fig. 7A schematic view of the EpicⓇ biosensor. When the glass substrate is illuminated with broadband light, only a ‘single’ wavelength that is resonant with the waveguide grating structure is strongly reflected. The EpicⓇ system measures the wavelength reflected by the sensor which is determined by the optical properties of the sensing zone within approximately 150 nm of the sensor. The magnitude of this wavelength shift is proportional to the amount of DMR. Republished from [204]; permission conveyed through Copyright Clearance Center, Inc, License Number 4876710020488.