Literature DB >> 32632317

RNA contributions to the form and function of biomolecular condensates.

Christine Roden1,2, Amy S Gladfelter3,4,5.   

Abstract

Biomolecular condensation partitions cellular contents and has important roles in stress responses, maintaining homeostasis, development and disease. Many nuclear and cytoplasmic condensates are rich in RNA and RNA-binding proteins (RBPs), which undergo liquid-liquid phase separation (LLPS). Whereas the role of RBPs in condensates has been well studied, less attention has been paid to the contribution of RNA to LLPS. In this Review, we discuss the role of RNA in biomolecular condensation and highlight considerations for designing condensate reconstitution experiments. We focus on RNA properties such as composition, length, structure, modifications and expression level. These properties can modulate the biophysical features of native condensates, including their size, shape, viscosity, liquidity, surface tension and composition. We also discuss the role of RNA-protein condensates in development, disease and homeostasis, emphasizing how their properties and function can be determined by RNA. Finally, we discuss the multifaceted cellular functions of biomolecular condensates, including cell compartmentalization through RNA transport and localization, supporting catalytic processes, storage and inheritance of specific molecules, and buffering noise and responding to stress.

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Year:  2020        PMID: 32632317      PMCID: PMC7785677          DOI: 10.1038/s41580-020-0264-6

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  142 in total

1.  mRNA structure determines specificity of a polyQ-driven phase separation.

Authors:  Erin M Langdon; Yupeng Qiu; Amirhossein Ghanbari Niaki; Grace A McLaughlin; Chase A Weidmann; Therese M Gerbich; Jean A Smith; John M Crutchley; Christina M Termini; Kevin M Weeks; Sua Myong; Amy S Gladfelter
Journal:  Science       Date:  2018-04-12       Impact factor: 47.728

2.  The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics.

Authors:  Shana Elbaum-Garfinkle; Younghoon Kim; Krzysztof Szczepaniak; Carlos Chih-Hsiung Chen; Christian R Eckmann; Sua Myong; Clifford P Brangwynne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

3.  RNA Controls PolyQ Protein Phase Transitions.

Authors:  Huaiying Zhang; Shana Elbaum-Garfinkle; Erin M Langdon; Nicole Taylor; Patricia Occhipinti; Andrew A Bridges; Clifford P Brangwynne; Amy S Gladfelter
Journal:  Mol Cell       Date:  2015-10-15       Impact factor: 17.970

4.  Valence and patterning of aromatic residues determine the phase behavior of prion-like domains.

Authors:  Erik W Martin; Alex S Holehouse; Ivan Peran; Mina Farag; J Jeremias Incicco; Anne Bremer; Christy R Grace; Andrea Soranno; Rohit V Pappu; Tanja Mittag
Journal:  Science       Date:  2020-02-07       Impact factor: 47.728

5.  In vitro model of aluminum-induced osteomalacia: inhibition of hydroxyapatite formation and growth.

Authors:  N C Blumenthal; A S Posner
Journal:  Calcif Tissue Int       Date:  1984-07       Impact factor: 4.333

6.  Reentrant Phase Transitions and Non-Equilibrium Dynamics in Membraneless Organelles.

Authors:  Anthony N Milin; Ashok A Deniz
Journal:  Biochemistry       Date:  2018-04-03       Impact factor: 3.162

7.  Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein.

Authors:  Chi W Pak; Martyna Kosno; Alex S Holehouse; Shae B Padrick; Anuradha Mittal; Rustam Ali; Ali A Yunus; David R Liu; Rohit V Pappu; Michael K Rosen
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  Intrinsically disordered linkers determine the interplay between phase separation and gelation in multivalent proteins.

Authors:  Tyler S Harmon; Alex S Holehouse; Michael K Rosen; Rohit V Pappu
Journal:  Elife       Date:  2017-11-01       Impact factor: 8.140

10.  m6A enhances the phase separation potential of mRNA.

Authors:  Ryan J Ries; Sara Zaccara; Pierre Klein; Anthony Olarerin-George; Sim Namkoong; Brian F Pickering; Deepak P Patil; Hojoong Kwak; Jun Hee Lee; Samie R Jaffrey
Journal:  Nature       Date:  2019-07-10       Impact factor: 69.504

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  91 in total

Review 1.  Generic nature of the condensed states of proteins.

Authors:  Monika Fuxreiter; Michele Vendruscolo
Journal:  Nat Cell Biol       Date:  2021-06-09       Impact factor: 28.824

Review 2.  Non-coding RNAs in chromatin folding and nuclear organization.

Authors:  Sergey V Razin; Alexey A Gavrilov
Journal:  Cell Mol Life Sci       Date:  2021-06-11       Impact factor: 9.261

Review 3.  Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing.

Authors:  Simon Alberti; Anthony A Hyman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-01-28       Impact factor: 94.444

Review 4.  ArcRNAs and the formation of nuclear bodies.

Authors:  Shinichi Nakagawa; Tomohiro Yamazaki; Taro Mannen; Tetsuro Hirose
Journal:  Mamm Genome       Date:  2021-06-03       Impact factor: 2.957

Review 5.  The control of polycomb repressive complexes by long noncoding RNAs.

Authors:  Jackson B Trotman; Keean C A Braceros; Rachel E Cherney; McKenzie M Murvin; J Mauro Calabrese
Journal:  Wiley Interdiscip Rev RNA       Date:  2021-04-16       Impact factor: 9.957

6.  Single-molecule and ensemble methods to probe RNP nucleation and condensate properties.

Authors:  Kevin Rhine; Sophie Skanchy; Sua Myong
Journal:  Methods       Date:  2021-02-19       Impact factor: 3.608

Review 7.  Get closer and make hotspots: liquid-liquid phase separation in plants.

Authors:  Jiwoo Kim; Hongwoo Lee; Hong Gil Lee; Pil Joon Seo
Journal:  EMBO Rep       Date:  2021-04-28       Impact factor: 8.807

8.  Quantifying viscosity and surface tension of multicomponent protein-nucleic acid condensates.

Authors:  Ibraheem Alshareedah; George M Thurston; Priya R Banerjee
Journal:  Biophys J       Date:  2021-01-14       Impact factor: 4.033

Review 9.  Biomolecular Condensates and Cancer.

Authors:  Ann Boija; Isaac A Klein; Richard A Young
Journal:  Cancer Cell       Date:  2021-01-07       Impact factor: 31.743

10.  RNA-Mediated Feedback Control of Transcriptional Condensates.

Authors:  Jonathan E Henninger; Ozgur Oksuz; Krishna Shrinivas; Ido Sagi; Gary LeRoy; Ming M Zheng; J Owen Andrews; Alicia V Zamudio; Charalampos Lazaris; Nancy M Hannett; Tong Ihn Lee; Phillip A Sharp; Ibrahim I Cissé; Arup K Chakraborty; Richard A Young
Journal:  Cell       Date:  2020-12-16       Impact factor: 41.582

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