Literature DB >> 33333019

RNA-Mediated Feedback Control of Transcriptional Condensates.

Jonathan E Henninger1, Ozgur Oksuz1, Krishna Shrinivas2, Ido Sagi1, Gary LeRoy3, Ming M Zheng4, J Owen Andrews4, Alicia V Zamudio5, Charalampos Lazaris6, Nancy M Hannett1, Tong Ihn Lee1, Phillip A Sharp7, Ibrahim I Cissé4, Arup K Chakraborty8, Richard A Young9.   

Abstract

Regulation of biological processes typically incorporates mechanisms that initiate and terminate the process and, where understood, these mechanisms often involve feedback control. Regulation of transcription is a fundamental cellular process where the mechanisms involved in initiation have been studied extensively, but those involved in arresting the process are poorly understood. Modeling of the potential roles of RNA in transcriptional control suggested a non-equilibrium feedback control mechanism where low levels of RNA promote condensates formed by electrostatic interactions whereas relatively high levels promote dissolution of these condensates. Evidence from in vitro and in vivo experiments support a model where RNAs produced during early steps in transcription initiation stimulate condensate formation, whereas the burst of RNAs produced during elongation stimulate condensate dissolution. We propose that transcriptional regulation incorporates a feedback mechanism whereby transcribed RNAs initially stimulate but then ultimately arrest the process.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  RNA; complex coacervates; enhancer; feedback; mediator; non-equilibrium; noncoding RNA; phase separation; transcription; transcriptional condensates

Mesh:

Substances:

Year:  2020        PMID: 33333019      PMCID: PMC8128340          DOI: 10.1016/j.cell.2020.11.030

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  113 in total

1.  Dynamics of the p53-Mdm2 feedback loop in individual cells.

Authors:  Galit Lahav; Nitzan Rosenfeld; Alex Sigal; Naama Geva-Zatorsky; Arnold J Levine; Michael B Elowitz; Uri Alon
Journal:  Nat Genet       Date:  2004-01-18       Impact factor: 38.330

2.  Phase separation in polyelectrolyte solutions; theory of complex coacervation.

Authors:  J T OVERBEEK; M J VOORN
Journal:  J Cell Physiol Suppl       Date:  1957-05

3.  Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH.

Authors:  O Flores; H Lu; D Reinberg
Journal:  J Biol Chem       Date:  1992-02-05       Impact factor: 5.157

4.  Fast transcription rates of RNA polymerase II in human cells.

Authors:  Paolo Maiuri; Anna Knezevich; Alex De Marco; Davide Mazza; Anna Kula; Jim G McNally; Alessandro Marcello
Journal:  EMBO Rep       Date:  2011-12-01       Impact factor: 8.807

5.  Formation of Multiphase Complex Coacervates and Partitioning of Biomolecules within them.

Authors:  Gregory A Mountain; Christine D Keating
Journal:  Biomacromolecules       Date:  2019-11-27       Impact factor: 6.988

Review 6.  Liquid phase condensation in cell physiology and disease.

Authors:  Yongdae Shin; Clifford P Brangwynne
Journal:  Science       Date:  2017-09-22       Impact factor: 47.728

Review 7.  Multimodal Long Noncoding RNA Interaction Networks: Control Panels for Cell Fate Specification.

Authors:  Keriayn N Smith; Sarah C Miller; Gabriele Varani; J Mauro Calabrese; Terry Magnuson
Journal:  Genetics       Date:  2019-12       Impact factor: 4.562

8.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

9.  Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles.

Authors:  Timothy J Nott; Evangelia Petsalaki; Patrick Farber; Dylan Jervis; Eden Fussner; Anne Plochowietz; Timothy D Craggs; David P Bazett-Jones; Tony Pawson; Julie D Forman-Kay; Andrew J Baldwin
Journal:  Mol Cell       Date:  2015-03-05       Impact factor: 17.970

10.  Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.

Authors:  Yang Eric Guo; John C Manteiga; Jonathan E Henninger; Benjamin R Sabari; Alessandra Dall'Agnese; Nancy M Hannett; Jan-Hendrik Spille; Lena K Afeyan; Alicia V Zamudio; Krishna Shrinivas; Brian J Abraham; Ann Boija; Tim-Michael Decker; Jenna K Rimel; Charli B Fant; Tong Ihn Lee; Ibrahim I Cisse; Phillip A Sharp; Dylan J Taatjes; Richard A Young
Journal:  Nature       Date:  2019-08-07       Impact factor: 49.962

View more
  66 in total

Review 1.  Advances in targeting 'undruggable' transcription factors with small molecules.

Authors:  Matthew J Henley; Angela N Koehler
Journal:  Nat Rev Drug Discov       Date:  2021-05-18       Impact factor: 84.694

Review 2.  Phase separation drives tumor pathogenesis and evolution: all roads lead to Rome.

Authors:  Xiang Gu; Ai Zhuang; Jie Yu; Peiwei Chai; Renbing Jia; Jing Ruan
Journal:  Oncogene       Date:  2022-02-08       Impact factor: 9.867

3.  Material properties of phase-separated TFEB condensates regulate the autophagy-lysosome pathway.

Authors:  Zheng Wang; Di Chen; Dongshi Guan; Xiaobo Liang; Jianfeng Xue; Hongyu Zhao; Guangtao Song; Jizhong Lou; Yan He; Hong Zhang
Journal:  J Cell Biol       Date:  2022-03-16       Impact factor: 10.539

Review 4.  Conformational Freedom and Topological Confinement of Proteins in Biomolecular Condensates.

Authors:  Daniel Scholl; Ashok A Deniz
Journal:  J Mol Biol       Date:  2021-11-09       Impact factor: 5.469

Review 5.  Using CRISPR to understand and manipulate gene regulation.

Authors:  Ersin Akinci; Marisa C Hamilton; Benyapa Khowpinitchai; Richard I Sherwood
Journal:  Development       Date:  2021-04-29       Impact factor: 6.868

Review 6.  Biomolecular Condensates and Cancer.

Authors:  Ann Boija; Isaac A Klein; Richard A Young
Journal:  Cancer Cell       Date:  2021-01-07       Impact factor: 31.743

7.  There is plenty of room in protein-RNA condensates.

Authors:  Miao Yu; Edward A Lemke
Journal:  Biophys J       Date:  2021-02-24       Impact factor: 4.033

Review 8.  RNA and liquid-liquid phase separation.

Authors:  Qi Guo; Xiangmin Shi; Xiangting Wang
Journal:  Noncoding RNA Res       Date:  2021-04-28

Review 9.  Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription.

Authors:  Megan Palacio; Dylan J Taatjes
Journal:  J Mol Biol       Date:  2021-08-30       Impact factor: 5.469

Review 10.  Liquid-liquid phase separation in human health and diseases.

Authors:  Bin Wang; Lei Zhang; Tong Dai; Ziran Qin; Huasong Lu; Long Zhang; Fangfang Zhou
Journal:  Signal Transduct Target Ther       Date:  2021-08-02
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.