Literature DB >> 34085114

ArcRNAs and the formation of nuclear bodies.

Shinichi Nakagawa1, Tomohiro Yamazaki2, Taro Mannen3, Tetsuro Hirose2.   

Abstract

Long noncoding RNAs (lncRNAs) have long been collectively and passively defined as transcripts that do not encode proteins. However, extensive functional studies performed over the last decade have enabled the classification of lncRNAs into multiple categories according to their functions and/or molecular properties. Architectual RNAs (arcRNAs) are a group of lncRNAs that serve as architectural components of submicron-scale cellular bodies or nonmembranous organelles, which are composed of specific sets of proteins and nucleic acids involved in particular molecular processes. In this review, we focus on arcRNAs that function in the nucleus, which provide a structural basis for the formation of nuclear bodies, nonmembranous organelles in the cell nucleus. We will summarize the current list of arcRNAs and proteins associated with classic and more recently discovered nuclear bodies and discuss general rules that govern the formation of nuclear bodies, emphasizing weak multivalent interactions mediated by innately flexible biomolecules.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

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Year:  2021        PMID: 34085114     DOI: 10.1007/s00335-021-09881-5

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  168 in total

1.  Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.

Authors:  Timothy E Audas; Mathieu D Jacob; Stephen Lee
Journal:  Mol Cell       Date:  2012-01-27       Impact factor: 17.970

2.  Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.

Authors:  Claus M Azzalin; Patrick Reichenbach; Lela Khoriauli; Elena Giulotto; Joachim Lingner
Journal:  Science       Date:  2007-10-04       Impact factor: 47.728

3.  Two distinct nuclear stress bodies containing different sets of RNA-binding proteins are formed with HSATIII architectural noncoding RNAs upon thermal stress exposure.

Authors:  Mahmoud Khamis Aly; Kensuke Ninomiya; Shungo Adachi; Tohru Natsume; Tetsuro Hirose
Journal:  Biochem Biophys Res Commun       Date:  2019-06-18       Impact factor: 3.575

4.  Adaptation to Stressors by Systemic Protein Amyloidogenesis.

Authors:  Timothy E Audas; Danielle E Audas; Mathieu D Jacob; J J David Ho; Mireille Khacho; Miling Wang; J Kishan Perera; Caroline Gardiner; Clay A Bennett; Trajen Head; Oleksandr N Kryvenko; Mercé Jorda; Sylvia Daunert; Arun Malhotra; Laura Trinkle-Mulcahy; Mark L Gonzalgo; Stephen Lee
Journal:  Dev Cell       Date:  2016-10-06       Impact factor: 12.270

Review 5.  Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates.

Authors:  Simon Alberti; Amy Gladfelter; Tanja Mittag
Journal:  Cell       Date:  2019-01-24       Impact factor: 41.582

6.  p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity.

Authors:  Carmen Adriaens; Laura Standaert; Jasmine Barra; Mathilde Latil; Annelien Verfaillie; Peter Kalev; Bram Boeckx; Paul W G Wijnhoven; Enrico Radaelli; William Vermi; Eleonora Leucci; Gaëlle Lapouge; Benjamin Beck; Joost van den Oord; Shinichi Nakagawa; Tetsuro Hirose; Anna A Sablina; Diether Lambrechts; Stein Aerts; Cédric Blanpain; Jean-Christophe Marine
Journal:  Nat Med       Date:  2016-07-04       Impact factor: 53.440

7.  The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis.

Authors:  Mohamed Osama Ali Abdalla; Tatsuro Yamamoto; Kazumitsu Maehara; Jumpei Nogami; Yasuyuki Ohkawa; Hisashi Miura; Rawin Poonperm; Ichiro Hiratani; Hideki Nakayama; Mitsuyoshi Nakao; Noriko Saitoh
Journal:  Nat Commun       Date:  2019-08-22       Impact factor: 14.919

8.  The long noncoding RNA NEAT1_1 is seemingly dispensable for normal tissue homeostasis and cancer cell growth.

Authors:  Carmen Adriaens; Florian Rambow; Greet Bervoets; Toomas Silla; Mari Mito; Tomoki Chiba; Hiroshi Asahara; Tetsuro Hirose; Shinichi Nakagawa; Torben Heick Jensen; Jean-Christophe Marine
Journal:  RNA       Date:  2019-09-24       Impact factor: 4.942

9.  In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation.

Authors:  Daniel Andergassen; Zachary D Smith; Jordan P Lewandowski; Chiara Gerhardinger; Alexander Meissner; John L Rinn
Journal:  Elife       Date:  2019-11-18       Impact factor: 8.140

10.  Long noncoding RNA NEAT1 (nuclear paraspeckle assembly transcript 1) is critical for phenotypic switching of vascular smooth muscle cells.

Authors:  Abu Shufian Ishtiaq Ahmed; Kunzhe Dong; Jinhua Liu; Tong Wen; Luyi Yu; Fei Xu; Xiuhua Kang; Islam Osman; Guoqing Hu; Kristopher M Bunting; Danielle Crethers; Hongyu Gao; Wei Zhang; Yunlong Liu; Ke Wen; Gautam Agarwal; Tetsuro Hirose; Shinichi Nakagawa; Almira Vazdarjanova; Jiliang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-23       Impact factor: 11.205

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  2 in total

1.  Species-specific formation of paraspeckles in intestinal epithelium revealed by characterization of NEAT1 in naked mole-rat.

Authors:  Akihiro Yamada; Hikaru Toya; Mayuko Tanahashi; Misuzu Kurihara; Mari Mito; Shintaro Iwasaki; Satoshi Kurosaka; Toru Takumi; Archa Fox; Yoshimi Kawamura; Kyoko Miura; Shinichi Nakagawa
Journal:  RNA       Date:  2022-06-02       Impact factor: 5.636

Review 2.  Micellization: A new principle in the formation of biomolecular condensates.

Authors:  Tomohiro Yamazaki; Tetsuya Yamamoto; Tetsuro Hirose
Journal:  Front Mol Biosci       Date:  2022-08-29
  2 in total

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