Literature DB >> 33453268

Quantifying viscosity and surface tension of multicomponent protein-nucleic acid condensates.

Ibraheem Alshareedah1, George M Thurston2, Priya R Banerjee3.   

Abstract

Living cells organize their internal space into dynamic condensates through liquid-liquid phase separation of multivalent proteins in association with cellular nucleic acids. Here, we study how variations in nucleic acid (NA)-to-protein stoichiometry modulate the condensed phase organization and fluid dynamics in a model system of multicomponent heterotypic condensates. Employing a multiparametric approach comprised of video particle tracking microscopy and optical tweezer-induced droplet fusion, we show that the interfacial tension, but not viscosity, of protein-NA condensates is controlled by the NA/protein ratio across the two-phase regime. In parallel, we utilize fluorescence correlation spectroscopy to quantify protein and NA diffusion in the condensed phase. Fluorescence correlation spectroscopy measurements reveal that the diffusion of the component protein and NA within the condensate core is governed by the viscosity, and hence, also remains insensitive to the changes in NA-to-protein stoichiometry. Collectively, our results provide insights into the regulation of multicomponent heterotypic liquid condensates, reflecting how the bulk mixture composition affects their core versus surface organization and dynamical properties.
Copyright © 2021 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2021        PMID: 33453268      PMCID: PMC8059090          DOI: 10.1016/j.bpj.2021.01.005

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

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2.  Phase Separation in Biology and Disease.

Authors:  Julie D Forman-Kay; Richard W Kriwacki; Geraldine Seydoux
Journal:  J Mol Biol       Date:  2018-09-11       Impact factor: 5.469

3.  Fiji: an open-source platform for biological-image analysis.

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Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

4.  Determinants for Fusion Speed of Biomolecular Droplets.

Authors:  Archishman Ghosh; Huan-Xiang Zhou
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-08       Impact factor: 15.336

Review 5.  Liquid phase condensation in cell physiology and disease.

Authors:  Yongdae Shin; Clifford P Brangwynne
Journal:  Science       Date:  2017-09-22       Impact factor: 47.728

6.  Unblending of Transcriptional Condensates in Human Repeat Expansion Disease.

Authors:  Shaon Basu; Sebastian D Mackowiak; Henri Niskanen; Dora Knezevic; Vahid Asimi; Stefanie Grosswendt; Hylkje Geertsema; Salaheddine Ali; Ivana Jerković; Helge Ewers; Stefan Mundlos; Alexander Meissner; Daniel M Ibrahim; Denes Hnisz
Journal:  Cell       Date:  2020-05-07       Impact factor: 41.582

7.  Salt-dependent properties of a coacervate-like, self-assembled DNA liquid.

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Journal:  Soft Matter       Date:  2018-08-29       Impact factor: 3.679

Review 8.  Phase separation in biology; functional organization of a higher order.

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Journal:  Cell Commun Signal       Date:  2016-01-05       Impact factor: 5.712

9.  Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates.

Authors:  Paulo L Onuchic; Anthony N Milin; Ibraheem Alshareedah; Ashok A Deniz; Priya R Banerjee
Journal:  Sci Rep       Date:  2019-08-21       Impact factor: 4.379

10.  RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation.

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Journal:  Cell       Date:  2020-04-16       Impact factor: 41.582

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  20 in total

1.  Temperature-dependent reentrant phase transition of RNA-polycation mixtures.

Authors:  Paul Pullara; Ibraheem Alshareedah; Priya R Banerjee
Journal:  Soft Matter       Date:  2022-02-16       Impact factor: 3.679

2.  'RNA modulation of transport properties and stability in phase-separated condensates.

Authors:  Andrés R Tejedor; Adiran Garaizar; Jorge Ramírez; Jorge R Espinosa
Journal:  Biophys J       Date:  2021-11-09       Impact factor: 4.033

3.  Adaptable P body physical states differentially regulate bicoid mRNA storage during early Drosophila development.

Authors:  M Sankaranarayanan; Ryan J Emenecker; Elise L Wilby; Marcus Jahnel; Irmela R E A Trussina; Matt Wayland; Simon Alberti; Alex S Holehouse; Timothy T Weil
Journal:  Dev Cell       Date:  2021-10-15       Impact factor: 12.270

4.  Surface tension and viscosity of protein condensates quantified by micropipette aspiration.

Authors:  Huan Wang; Fleurie M Kelley; Dragomir Milovanovic; Benjamin S Schuster; Zheng Shi
Journal:  Biophys Rep (N Y)       Date:  2021-08-11

5.  Fluorescence Correlation Spectroscopy and Phase Separation.

Authors:  Juan Jeremías Incicco; Debjit Roy; Melissa D Stuchell-Brereton; Andrea Soranno
Journal:  Methods Mol Biol       Date:  2023

Review 6.  Ectopic biomolecular phase transitions: fusion proteins in cancer pathologies.

Authors:  Richoo B Davis; Mahdi Muhammad Moosa; Priya R Banerjee
Journal:  Trends Cell Biol       Date:  2022-04-25       Impact factor: 21.167

7.  Faces, facets, and functions of biomolecular condensates driven by multivalent proteins and nucleic acids.

Authors:  Jason D Kahn; Edward A Lemke; Rohit V Pappu
Journal:  Biophys J       Date:  2021-03-16       Impact factor: 4.033

8.  There is plenty of room in protein-RNA condensates.

Authors:  Miao Yu; Edward A Lemke
Journal:  Biophys J       Date:  2021-02-24       Impact factor: 4.033

9.  Role of Solvent Compatibility in the Phase Behavior of Binary Solutions of Weakly Associating Multivalent Polymers.

Authors:  Jasper J Michels; Mateusz Brzezinski; Tom Scheidt; Edward A Lemke; Sapun H Parekh
Journal:  Biomacromolecules       Date:  2021-12-04       Impact factor: 6.988

10.  Size conservation emerges spontaneously in biomolecular condensates formed by scaffolds and surfactant clients.

Authors:  Ignacio Sanchez-Burgos; Jerelle A Joseph; Rosana Collepardo-Guevara; Jorge R Espinosa
Journal:  Sci Rep       Date:  2021-07-27       Impact factor: 4.379

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