Literature DB >> 32498971

Nothing Is Yet Set in (Hi)stone: Novel Post-Translational Modifications Regulating Chromatin Function.

Jennifer C Chan1, Ian Maze2.   

Abstract

Histone post-translational modifications (PTMs) have emerged as exciting mechanisms of biological regulation, impacting pathways related to cancer, immunity, brain function, and more. Over the past decade alone, several histone PTMs have been discovered, including acylation, lipidation, monoaminylation, and glycation, many of which appear to have crucial roles in nucleosome stability and transcriptional regulation. In this review, we discuss novel histone PTMs identified within the past 10 years, with an extended focus on enzymatic versus nonenzymatic mechanisms underlying modification and adduction. Furthermore, we consider how these novel histone PTMs might fit within the framework of a so-called 'histone code', emphasizing the physiological relevance of these PTMs in metabolism, development, and disease states.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  acylation; glycation; histone code hypothesis; lipidation; monoaminylation; nonenzymatic adduction

Mesh:

Substances:

Year:  2020        PMID: 32498971      PMCID: PMC7502514          DOI: 10.1016/j.tibs.2020.05.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  95 in total

1.  Click Chemistry: Diverse Chemical Function from a Few Good Reactions.

Authors:  Hartmuth C. Kolb; M. G. Finn; K. Barry Sharpless
Journal:  Angew Chem Int Ed Engl       Date:  2001-06-01       Impact factor: 15.336

2.  Analysis of site-specific N-homocysteinylation of human serum albumin in vitro and in vivo using MALDI-ToF and LC-MS/MS mass spectrometry.

Authors:  Lukasz Marczak; Marta Sikora; Maciej Stobiecki; Hieronim Jakubowski
Journal:  J Proteomics       Date:  2011-02-15       Impact factor: 4.044

3.  Mechanisms Underlying Acrolein-Mediated Inhibition of Chromatin Assembly.

Authors:  Lei Fang; Danqi Chen; Clinton Yu; Hongjie Li; Jason Brocato; Lan Huang; Chunyuan Jin
Journal:  Mol Cell Biol       Date:  2016-11-14       Impact factor: 4.272

4.  Nuclear localization of histamine in neonatal rat brain.

Authors:  A B Young; C D Pert; D G Brown; K M Taylor; S H Snyder
Journal:  Science       Date:  1971-07-16       Impact factor: 47.728

Review 5.  Comprehensive Catalog of Currently Documented Histone Modifications.

Authors:  Yingming Zhao; Benjamin A Garcia
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-09-01       Impact factor: 10.005

6.  SIRT2 Reverses 4-Oxononanoyl Lysine Modification on Histones.

Authors:  Jing Jin; Bin He; Xiaoyu Zhang; Hening Lin; Yi Wang
Journal:  J Am Chem Soc       Date:  2016-09-15       Impact factor: 15.419

7.  Serotonylation of small GTPases is a signal transduction pathway that triggers platelet alpha-granule release.

Authors:  Diego J Walther; Jens-Uwe Peter; Sandra Winter; Markus Höltje; Nils Paulmann; Maik Grohmann; Jakob Vowinckel; Victor Alamo-Bethencourt; Claudia S Wilhelm; Gudrun Ahnert-Hilger; Michael Bader
Journal:  Cell       Date:  2003-12-26       Impact factor: 41.582

8.  Lysine glutarylation is a protein posttranslational modification regulated by SIRT5.

Authors:  Minjia Tan; Chao Peng; Kristin A Anderson; Peter Chhoy; Zhongyu Xie; Lunzhi Dai; Jeongsoon Park; Yue Chen; He Huang; Yi Zhang; Jennifer Ro; Gregory R Wagner; Michelle F Green; Andreas S Madsen; Jessica Schmiesing; Brett S Peterson; Guofeng Xu; Olga R Ilkayeva; Michael J Muehlbauer; Thomas Braulke; Chris Mühlhausen; Donald S Backos; Christian A Olsen; Peter J McGuire; Scott D Pletcher; David B Lombard; Matthew D Hirschey; Yingming Zhao
Journal:  Cell Metab       Date:  2014-04-01       Impact factor: 27.287

9.  Chemical tagging and customizing of cellular chromatin states using ultrafast trans-splicing inteins.

Authors:  Yael David; Miquel Vila-Perelló; Shivam Verma; Tom W Muir
Journal:  Nat Chem       Date:  2015-04-06       Impact factor: 24.427

10.  Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases.

Authors:  Rachel Fellows; Jérémy Denizot; Claudia Stellato; Alessandro Cuomo; Payal Jain; Elena Stoyanova; Szabina Balázsi; Zoltán Hajnády; Anke Liebert; Juri Kazakevych; Hector Blackburn; Renan Oliveira Corrêa; José Luís Fachi; Fabio Takeo Sato; Willian R Ribeiro; Caroline Marcantonio Ferreira; Hélène Perée; Mariangela Spagnuolo; Raphaël Mattiuz; Csaba Matolcsi; Joana Guedes; Jonathan Clark; Marc Veldhoen; Tiziana Bonaldi; Marco Aurélio Ramirez Vinolo; Patrick Varga-Weisz
Journal:  Nat Commun       Date:  2018-01-09       Impact factor: 14.919

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  19 in total

Review 1.  The evolving metabolic landscape of chromatin biology and epigenetics.

Authors:  Ziwei Dai; Vijyendra Ramesh; Jason W Locasale
Journal:  Nat Rev Genet       Date:  2020-09-09       Impact factor: 53.242

Review 2.  Mechanisms of gene regulation by histone degradation in adaptation of yeast: an overview of recent advances.

Authors:  Safir Ullah Khan; Munir Ullah Khan; Fadia Kalsoom; Muhammad Imran Khan; Shuang Gao; Ahsanullah Unar; Muhammad Zubair; Muhammad Bilal
Journal:  Arch Microbiol       Date:  2022-04-28       Impact factor: 2.552

3.  Development and Validation of Antibodies Targeting Site-Specific Histone Methylation.

Authors:  Lara Zorro Shahidian; Sylvain Daujat
Journal:  Methods Mol Biol       Date:  2022

4.  Exposure to drugs of abuse induce effects that persist across generations.

Authors:  Annalisa M Baratta; Richa S Rathod; Sonja L Plasil; Amit Seth; Gregg E Homanics
Journal:  Int Rev Neurobiol       Date:  2020-09-30       Impact factor: 3.230

5.  Site-specific ubiquitylation acts as a regulator of linker histone H1.

Authors:  Eva Höllmüller; Simon Geigges; Marie L Niedermeier; Kai-Michael Kammer; Simon M Kienle; Daniel Rösner; Martin Scheffner; Andreas Marx; Florian Stengel
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

Review 6.  A chemical field guide to histone nonenzymatic modifications.

Authors:  Sarah Faulkner; Igor Maksimovic; Yael David
Journal:  Curr Opin Chem Biol       Date:  2021-06-20       Impact factor: 8.972

Review 7.  Histone H1 Mutations in Lymphoma: A Link(er) between Chromatin Organization, Developmental Reprogramming, and Cancer.

Authors:  Alexey A Soshnev; C David Allis; Ethel Cesarman; Ari M Melnick
Journal:  Cancer Res       Date:  2021-09-27       Impact factor: 13.312

Review 8.  Cannabis and synaptic reprogramming of the developing brain.

Authors:  Anissa Bara; Jacqueline-Marie N Ferland; Gregory Rompala; Henrietta Szutorisz; Yasmin L Hurd
Journal:  Nat Rev Neurosci       Date:  2021-05-21       Impact factor: 38.755

Review 9.  Non-enzymatic Covalent Modifications as a New Chapter in the Histone Code.

Authors:  Igor Maksimovic; Yael David
Journal:  Trends Biochem Sci       Date:  2021-05-05       Impact factor: 14.264

Review 10.  Archaea: The Final Frontier of Chromatin.

Authors:  Shawn P Laursen; Samuel Bowerman; Karolin Luger
Journal:  J Mol Biol       Date:  2020-12-29       Impact factor: 5.469

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