Literature DB >> 24703693

Lysine glutarylation is a protein posttranslational modification regulated by SIRT5.

Minjia Tan1, Chao Peng2, Kristin A Anderson3, Peter Chhoy3, Zhongyu Xie2, Lunzhi Dai2, Jeongsoon Park4, Yue Chen2, He Huang2, Yi Zhang1, Jennifer Ro5, Gregory R Wagner3, Michelle F Green3, Andreas S Madsen6, Jessica Schmiesing7, Brett S Peterson3, Guofeng Xu2, Olga R Ilkayeva3, Michael J Muehlbauer3, Thomas Braulke7, Chris Mühlhausen7, Donald S Backos8, Christian A Olsen6, Peter J McGuire9, Scott D Pletcher5, David B Lombard4, Matthew D Hirschey10, Yingming Zhao11.   

Abstract

We report the identification and characterization of a five-carbon protein posttranslational modification (PTM) called lysine glutarylation (Kglu). This protein modification was detected by immunoblot and mass spectrometry (MS), and then comprehensively validated by chemical and biochemical methods. We demonstrated that the previously annotated deacetylase, sirtuin 5 (SIRT5), is a lysine deglutarylase. Proteome-wide analysis identified 683 Kglu sites in 191 proteins and showed that Kglu is highly enriched on metabolic enzymes and mitochondrial proteins. We validated carbamoyl phosphate synthase 1 (CPS1), the rate-limiting enzyme in urea cycle, as a glutarylated protein and demonstrated that CPS1 is targeted by SIRT5 for deglutarylation. We further showed that glutarylation suppresses CPS1 enzymatic activity in cell lines, mice, and a model of glutaric acidemia type I disease, the last of which has elevated glutaric acid and glutaryl-CoA. This study expands the landscape of lysine acyl modifications and increases our understanding of the deacylase SIRT5.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24703693      PMCID: PMC4108075          DOI: 10.1016/j.cmet.2014.03.014

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  43 in total

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Review 3.  Covalent histone modifications--miswritten, misinterpreted and mis-erased in human cancers.

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Journal:  Nat Rev Cancer       Date:  2010-07       Impact factor: 60.716

4.  Structure and function of carbamoylphosphate synthase. I. Transitions between two catalytically inactive forms and the active form.

Authors:  G Guthöhrlein; J Knappe
Journal:  Eur J Biochem       Date:  1968-12

5.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

6.  Identification of lysine succinylation as a new post-translational modification.

Authors:  Zhihong Zhang; Minjia Tan; Zhongyu Xie; Lunzhi Dai; Yue Chen; Yingming Zhao
Journal:  Nat Chem Biol       Date:  2010-12-12       Impact factor: 15.040

7.  Biochemical, pathologic and behavioral analysis of a mouse model of glutaric acidemia type I.

Authors:  David M Koeller; Michael Woontner; Linda S Crnic; Bette Kleinschmidt-DeMasters; Janet Stephens; Edgar L Hunt; Stephen I Goodman
Journal:  Hum Mol Genet       Date:  2002-02-15       Impact factor: 6.150

8.  Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.

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Journal:  Mol Cell       Date:  2012-11-29       Impact factor: 17.970

9.  Coenzyme specificity of Sir2 protein deacetylases: implications for physiological regulation.

Authors:  Manning T Schmidt; Brian C Smith; Michael D Jackson; John M Denu
Journal:  J Biol Chem       Date:  2004-07-21       Impact factor: 5.157

10.  Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase.

Authors:  Jintang Du; Yeyun Zhou; Xiaoyang Su; Jiu Jiu Yu; Saba Khan; Hong Jiang; Jungwoo Kim; Jimin Woo; Jun Huyn Kim; Brian Hyun Choi; Bin He; Wei Chen; Sheng Zhang; Richard A Cerione; Johan Auwerx; Quan Hao; Hening Lin
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

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  269 in total

Review 1.  Protein acetylation in metabolism - metabolites and cofactors.

Authors:  Keir J Menzies; Hongbo Zhang; Elena Katsyuba; Johan Auwerx
Journal:  Nat Rev Endocrinol       Date:  2015-10-27       Impact factor: 43.330

2.  Structural and Functional Insights into a Lysine Deacylase in the Cyanobacterium Synechococcus sp. PCC 7002.

Authors:  Xin Liu; Mingkun Yang; Yingfang Liu; Feng Ge; Jindong Zhao
Journal:  Plant Physiol       Date:  2020-07-27       Impact factor: 8.340

3.  Metabolomics-assisted proteomics identifies succinylation and SIRT5 as important regulators of cardiac function.

Authors:  Sushabhan Sadhukhan; Xiaojing Liu; Dongryeol Ryu; Ornella D Nelson; John A Stupinski; Zhi Li; Wei Chen; Sheng Zhang; Robert S Weiss; Jason W Locasale; Johan Auwerx; Hening Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-05       Impact factor: 11.205

Review 4.  Metabolic pathways at the crossroads of diabetes and inborn errors.

Authors:  Eric S Goetzman; Zhenwei Gong; Manuel Schiff; Yan Wang; Radhika H Muzumdar
Journal:  J Inherit Metab Dis       Date:  2017-09-26       Impact factor: 4.982

5.  Loss of sirtuin 4 leads to elevated glucose- and leucine-stimulated insulin levels and accelerated age-induced insulin resistance in multiple murine genetic backgrounds.

Authors:  Frank K Huynh; Xiaoke Hu; Zhihong Lin; James D Johnson; Matthew D Hirschey
Journal:  J Inherit Metab Dis       Date:  2017-07-19       Impact factor: 4.982

6.  Characterization of the cardiac succinylome and its role in ischemia-reperfusion injury.

Authors:  Jennifer A Boylston; Junhui Sun; Yong Chen; Marjan Gucek; Michael N Sack; Elizabeth Murphy
Journal:  J Mol Cell Cardiol       Date:  2015-09-24       Impact factor: 5.000

Review 7.  The multifaceted functions of sirtuins in cancer.

Authors:  Angeliki Chalkiadaki; Leonard Guarente
Journal:  Nat Rev Cancer       Date:  2015-09-18       Impact factor: 60.716

8.  Quantifying Competition among Mitochondrial Protein Acylation Events Induced by Ethanol Metabolism.

Authors:  Hadi R Ali; Mohammed A Assiri; Peter S Harris; Cole R Michel; Youngho Yun; John O Marentette; Frank K Huynh; David J Orlicky; Colin T Shearn; Laura M Saba; Richard Reisdorph; Nichole Reisdorph; Matthew D Hirschey; Kristofer S Fritz
Journal:  J Proteome Res       Date:  2019-01-31       Impact factor: 4.466

9.  Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.

Authors:  Zhen Chen; Xuhan Liu; Fuyi Li; Chen Li; Tatiana Marquez-Lago; André Leier; Tatsuya Akutsu; Geoffrey I Webb; Dakang Xu; Alexander Ian Smith; Lei Li; Kuo-Chen Chou; Jiangning Song
Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

Review 10.  The role of caloric load and mitochondrial homeostasis in the regulation of the NLRP3 inflammasome.

Authors:  Javier Traba; Michael N Sack
Journal:  Cell Mol Life Sci       Date:  2016-12-10       Impact factor: 9.261

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