Literature DB >> 34157651

A chemical field guide to histone nonenzymatic modifications.

Sarah Faulkner1, Igor Maksimovic2, Yael David3.   

Abstract

Histone nonenzymatic covalent modifications (NECMs) have recently emerged as an understudied class of posttranslational modifications that regulate chromatin structure and function. These NECMs alter the surface topology of histone proteins, their interactions with DNA and chromatin regulators, as well as compete for modification sites with enzymatic posttranslational modifications. NECM formation depends on the chemical compatibility between a reactive molecule and its target site, in addition to their relative stoichiometries. Here we survey the chemical reactions and conditions that govern the addition of NECMs onto histones as a manual to guide the identification of new physiologically relevant chemical adducts. Characterizing NECMs on chromatin is critical to attain a comprehensive understanding of this new chapter of the so-called "histone code".
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Acylation; Antioxidant; Epigenetics; Glycation; Histone; Lipidation; Non-enzymatic covalent modifications; Nucleosome; Post-translational modification

Mesh:

Substances:

Year:  2021        PMID: 34157651      PMCID: PMC9063854          DOI: 10.1016/j.cbpa.2021.05.002

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  59 in total

1.  2-Oxo-histidine-containing dipeptides are functional oxidation products.

Authors:  Hideshi Ihara; Yuki Kakihana; Akane Yamakage; Kenji Kai; Takahiro Shibata; Motohiro Nishida; Ken-Ichi Yamada; Koji Uchida
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

2.  iGlu_AdaBoost: Identification of Lysine Glutarylation Using the AdaBoost Classifier.

Authors:  Lijun Dou; Xiaoling Li; Lichao Zhang; Huaikun Xiang; Lei Xu
Journal:  J Proteome Res       Date:  2020-10-22       Impact factor: 4.466

Review 3.  Synthesis of modified proteins via functionalization of dehydroalanine.

Authors:  Jitka Dadová; Sébastien Rg Galan; Benjamin G Davis
Journal:  Curr Opin Chem Biol       Date:  2018-06-15       Impact factor: 8.822

4.  Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naïve pluripotency by complementary mechanisms.

Authors:  Timothy Alexander Hore; Ferdinand von Meyenn; Mirunalini Ravichandran; Martin Bachman; Gabriella Ficz; David Oxley; Fátima Santos; Shankar Balasubramanian; Tomasz P Jurkowski; Wolf Reik
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-11       Impact factor: 11.205

5.  KAT2A coupled with the α-KGDH complex acts as a histone H3 succinyltransferase.

Authors:  Yugang Wang; Yusong R Guo; Ke Liu; Zheng Yin; Rui Liu; Yan Xia; Lin Tan; Peiying Yang; Jong-Ho Lee; Xin-Jian Li; David Hawke; Yanhua Zheng; Xu Qian; Jianxin Lyu; Jie He; Dongming Xing; Yizhi Jane Tao; Zhimin Lu
Journal:  Nature       Date:  2017-12-06       Impact factor: 49.962

6.  Protective effects of L-carnosine on CCl4 -induced hepatic injury in rats.

Authors:  Mehyar Mohammad Alsheblak; Nehal M Elsherbiny; Amro El-Karef; Mamdouh M El-Shishtawy
Journal:  Eur Cytokine Netw       Date:  2016-03-01       Impact factor: 2.737

7.  An Azidoribose Probe to Track Ketoamine Adducts in Histone Ribose Glycation.

Authors:  Igor Maksimovic; Qingfei Zheng; Marissa N Trujillo; James J Galligan; Yael David
Journal:  J Am Chem Soc       Date:  2020-05-22       Impact factor: 15.419

8.  Inspector: a lysine succinylation predictor based on edited nearest-neighbor undersampling and adaptive synthetic oversampling.

Authors:  Yan Zhu; Cangzhi Jia; Fuyi Li; Jiangning Song
Journal:  Anal Biochem       Date:  2020-01-20       Impact factor: 3.365

9.  Lysine benzoylation is a histone mark regulated by SIRT2.

Authors:  He Huang; Di Zhang; Yi Wang; Mathew Perez-Neut; Zhen Han; Y George Zheng; Quan Hao; Yingming Zhao
Journal:  Nat Commun       Date:  2018-08-28       Impact factor: 14.919

10.  Glyoxal formation and its role in endogenous oxalate synthesis.

Authors:  Jessica N Lange; Kyle D Wood; John Knight; Dean G Assimos; Ross P Holmes
Journal:  Adv Urol       Date:  2012-04-08
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  2 in total

Review 1.  Histone post-translational modifications - cause and consequence of genome function.

Authors:  Gonzalo Millán-Zambrano; Adam Burton; Andrew J Bannister; Robert Schneider
Journal:  Nat Rev Genet       Date:  2022-03-25       Impact factor: 59.581

Review 2.  Chromatin structure in cancer.

Authors:  Meng Wang; Benjamin D Sunkel; William C Ray; Benjamin Z Stanton
Journal:  BMC Mol Cell Biol       Date:  2022-07-28
  2 in total

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