Literature DB >> 26330523

Comprehensive Catalog of Currently Documented Histone Modifications.

Yingming Zhao1, Benjamin A Garcia2.   

Abstract

Modern techniques in molecular biology, genomics, and mass spectrometry-based proteomics have identified a large number of novel histone posttranslational modifications (PTMs), many of whose functions are still under intense investigation. Here, we catalog histone PTMs under two classes: first, those whose functions have been fairly well studied and, second, those PTMs that have been more recently identified but whose functions remain unclear. We hope that this will be a useful resource for researchers from all biological or technical backgrounds, aiding in their chromatin and epigenetic pursuits.
Copyright © 2015 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2015        PMID: 26330523      PMCID: PMC4563710          DOI: 10.1101/cshperspect.a025064

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  285 in total

Review 1.  Histone modifications in transcriptional regulation.

Authors:  Shelley L Berger
Journal:  Curr Opin Genet Dev       Date:  2002-04       Impact factor: 5.578

2.  Methylation of histone H3 Lys 4 in coding regions of active genes.

Authors:  Bradley E Bernstein; Emily L Humphrey; Rachel L Erlich; Robert Schneider; Peter Bouman; Jun S Liu; Tony Kouzarides; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

Review 3.  Histones and histone modifications.

Authors:  Craig L Peterson; Marc-André Laniel
Journal:  Curr Biol       Date:  2004-07-27       Impact factor: 10.834

Review 4.  Chromatin remodelling and epigenetic features of germ cells.

Authors:  Sarah Kimmins; Paolo Sassone-Corsi
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

5.  A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.

Authors:  Hiroshi Masumoto; David Hawke; Ryuji Kobayashi; Alain Verreault
Journal:  Nature       Date:  2005-07-14       Impact factor: 49.962

6.  Specific antibodies reveal ordered and cell-cycle-related use of histone-H4 acetylation sites in mammalian cells.

Authors:  B M Turner; G Fellows
Journal:  Eur J Biochem       Date:  1989-01-15

7.  Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase.

Authors:  A Verreault; P D Kaufman; R Kobayashi; B Stillman
Journal:  Curr Biol       Date:  1998-01-15       Impact factor: 10.834

8.  Histone H3 Thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae.

Authors:  Stephen P Baker; Jennifer Phillips; Scott Anderson; Qifeng Qiu; Jeffrey Shabanowitz; M Mitchell Smith; John R Yates; Donald F Hunt; Patrick A Grant
Journal:  Nat Cell Biol       Date:  2010-02-07       Impact factor: 28.824

9.  Ezh2 controls B cell development through histone H3 methylation and Igh rearrangement.

Authors:  I-Hsin Su; Ashwin Basavaraj; Andrew N Krutchinsky; Oliver Hobert; Axel Ullrich; Brian T Chait; Alexander Tarakhovsky
Journal:  Nat Immunol       Date:  2002-12-23       Impact factor: 25.606

10.  Posttranslational modification of CENP-A influences the conformation of centromeric chromatin.

Authors:  Aaron O Bailey; Tanya Panchenko; Kizhakke M Sathyan; Janusz J Petkowski; Pei-Jing Pai; Dina L Bai; David H Russell; Ian G Macara; Jeffrey Shabanowitz; Donald F Hunt; Ben E Black; Daniel R Foltz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-01       Impact factor: 11.205

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  137 in total

1.  Reshaping the Chromatin and Epigenetic Landscapes with Quantitative Mass Spectrometry.

Authors:  Michael P Washburn; Yingming Zhao; Benjamin A Garcia
Journal:  Mol Cell Proteomics       Date:  2016-01-26       Impact factor: 5.911

2.  PHF1 Tudor and N-terminal domains synergistically target partially unwrapped nucleosomes to increase DNA accessibility.

Authors:  Matthew D Gibson; Jovylyn Gatchalian; Andrew Slater; Tatiana G Kutateladze; Michael G Poirier
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

Review 3.  Epigenetics and the dynamics of chromatin during adenovirus infections.

Authors:  Kelsey L Lynch; Linda R Gooding; Charlie Garnett-Benson; David A Ornelles; Daphne C Avgousti
Journal:  FEBS Lett       Date:  2019-12-15       Impact factor: 4.124

4.  Histone modification signatures in human sperm distinguish clinical abnormalities.

Authors:  Samantha B Schon; Lacey J Luense; Xiaoshi Wang; Marisa S Bartolomei; Christos Coutifaris; Benjamin A Garcia; Shelley L Berger
Journal:  J Assist Reprod Genet       Date:  2018-11-05       Impact factor: 3.412

Review 5.  Targeting the epigenome in malignant pleural mesothelioma.

Authors:  Kaitlin C McLoughlin; Andrew S Kaufman; David S Schrump
Journal:  Transl Lung Cancer Res       Date:  2017-06

6.  Extended Recognition of the Histone H3 Tail by Histone Demethylase KDM5A.

Authors:  Nektaria Petronikolou; James E Longbotham; Danica Galonić Fujimori
Journal:  Biochemistry       Date:  2020-01-30       Impact factor: 3.162

7.  Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain.

Authors:  Yuanyuan Li; Benjamin R Sabari; Tatyana Panchenko; Hong Wen; Dan Zhao; Haipeng Guan; Liling Wan; He Huang; Zhanyun Tang; Yingming Zhao; Robert G Roeder; Xiaobing Shi; C David Allis; Haitao Li
Journal:  Mol Cell       Date:  2016-04-21       Impact factor: 17.970

8.  The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis.

Authors:  E Shannon Torres; Roger B Deal
Journal:  Plant J       Date:  2019-03-19       Impact factor: 6.417

9.  Epigenetic regulation of cellular and cytomegalovirus genes during myeloid cell development.

Authors:  Xue-Feng Liu; Mary Hummel; Michael Abecassis
Journal:  Intern Med Rev (Wash D C)       Date:  2017-03

Review 10.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

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